RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HIST1H2AHQ96KK5 128 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 PAFAH2Q99487 392 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 HIST1H2AJQ99878 128 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 MCMBPQ9BTE3 642 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 H2AFJQ9BTM1 129 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 FUT8Q9BYC5 575 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 ZNF768Q9H5H4 540 aaKnown RBP16.66■□□□□ 0.26
CLN3-217ENST00000565354 SOHLH2Q9NX45 425 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 FOXJ2Q9P0K8 574 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.66■□□□□ 0.26
CLN3-217ENST00000565354 POMT2Q9UKY4 750 aa16.66■□□□□ 0.26
CLN3-217ENST00000565354 SLC16A5O15375 505 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 PHGDHO43175 533 aaKnown RBP16.65■□□□□ 0.26
CLN3-217ENST00000565354 TPBGLP0DKB5 382 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 PRDX3P30048 256 aaKnown RBP16.65■□□□□ 0.26
CLN3-217ENST00000565354 ETV5P41161 510 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 SERPINB9P50453 376 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 VSNL1P62760 191 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 BMPR2Q13873 1038 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 GRB7Q14451 532 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 KIR2DS3Q14952 304 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 ERCC6LQ2NKX8 1250 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.65■□□□□ 0.26
CLN3-217ENST00000565354 MROH9Q5TGP6 573 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 TMEM164Q5U3C3 297 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 SPESP1Q6UW49 350 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 CEP97Q8IW35 865 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 FBXO15Q8NCQ5 510 aaPredicted RBP16.65■□□□□ 0.26
CLN3-217ENST00000565354 SLC44A1Q8WWI5 657 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 USP7Q93009 1102 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 PKP4Q99569 1192 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 CCDC77Q9BR77 488 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 ADNPQ9H2P0 1102 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 PARVBQ9HBI1 364 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 C1GALT1Q9NS00 363 aa16.65■□□□□ 0.26
CLN3-217ENST00000565354 KRT87PA6NCN2 255 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 C9orf172C9J069 976 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 GFYI3L273 518 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 MYO1CO00159 1063 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 KRT38O76015 456 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 ZBTB11O95625 1053 aaPredicted RBP16.64■□□□□ 0.25
CLN3-217ENST00000565354 UGT2B7P16662 529 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 CD82P27701 267 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 CRABP2P29373 138 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 HSD17B2P37059 387 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 FOXM1Q08050 763 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 TMTC4Q5T4D3 741 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 LGSNQ5TDP6 509 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 CYB5D1Q6P9G0 228 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 FBXO38Q6PIJ6 1188 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 FRA10AC1Q70Z53 315 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 TBC1D1Q86TI0 1168 aaPredicted RBP16.64■□□□□ 0.25
CLN3-217ENST00000565354 KMT5CQ86Y97 462 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 SYTL1Q8IYJ3 562 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 CARFQ8N187 725 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 PDLIM5Q96HC4 596 aaKnown RBP16.64■□□□□ 0.25
CLN3-217ENST00000565354 SLC12A9Q9BXP2 914 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 OCIAD1Q9NX40 245 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 SLC39A1Q9NY26 324 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 SPHK1Q9NYA1 384 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 CTNNAL1Q9UBT7 734 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 TLK1Q9UKI8 766 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 ADAMTS6Q9UKP5 1117 aa16.64■□□□□ 0.25
CLN3-217ENST00000565354 IGHV5-51A0A0C4DH38 117 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 A0A0J9YY10 115 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.63■□□□□ 0.25
CLN3-217ENST00000565354 TSPAN12O95859 305 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 CCDC166P0CW27 439 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 CCL4P13236 92 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 OAS2P29728 719 aaKnown RBP16.63■□□□□ 0.25
CLN3-217ENST00000565354 RPA3P35244 121 aaPredicted RBP16.63■□□□□ 0.25
CLN3-217ENST00000565354 SERPINB8P50452 374 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 PNLIPRP1P54315 467 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 SLC29A2Q14542 456 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 ARHGAP19Q14CB8 494 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 SF1Q15637 639 aaKnown RBP16.63■□□□□ 0.25
CLN3-217ENST00000565354 WDR93Q6P2C0 686 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 TMEM207Q6UWW9 146 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 CMC1Q7Z7K0 106 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 PTRH1Q86Y79 214 aaKnown RBP16.63■□□□□ 0.25
CLN3-217ENST00000565354 LMNTD1Q8N9Z9 388 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 LINC01555Q8NAE3 123 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 KLHL6Q8WZ60 621 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 CCDC138Q96M89 665 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 OR2A14Q96R47 310 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 TXLNGYQ9BZA5 131 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 B3GNT4Q9C0J1 378 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 EPN3Q9H201 632 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 ABCF3Q9NUQ8 709 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 PDE10AQ9Y233 779 aa16.63■□□□□ 0.25
CLN3-217ENST00000565354 CLEC18AA5D8T8 446 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 NPEPPSL1A6NEC2 478 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 SLC9B1P1A6NJY1 282 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 B4E171 279 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 ENO2P09104 434 aaPredicted RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 FGF3P11487 239 aaPredicted RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 NELFEP18615 380 aaKnown RBP16.62■□□□□ 0.25
CLN3-217ENST00000565354 CNTFP26441 200 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 TYK2P29597 1187 aa16.62■□□□□ 0.25
CLN3-217ENST00000565354 TSPAN7P41732 249 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms