RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SHANK1Q9Y566 2161 aa16.49■□□□□ 0.23
VPS9D1-203ENST00000563798 MAGEB16A2A368 324 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 VSTM2BA6NLU5 285 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 NIPSNAP2O75323 286 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 MLNP12872 115 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 MCM3P25205 808 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 FMO4P31512 558 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 BDKRB1P46663 353 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 AIMP2Q13155 320 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 NAA25Q14CX7 972 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 CES3Q6UWW8 571 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 CENPUQ71F23 418 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 RNF44Q7L0R7 432 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 CAND1Q86VP6 1230 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 TMEM151BQ8IW70 566 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 RASGEF1CQ8N431 466 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 TTC29Q8NA56 475 aaPredicted RBP16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 MFRPQ9BY79 579 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 INTS10Q9NVR2 710 aaKnown RBP16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 KLHL42Q9P2K6 505 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 B3GNT3Q9Y2A9 372 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 VPS9D1Q9Y2B5 631 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 ANKRD12Q6UB98 2062 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 PCM1Q15154 2024 aa16.48■□□□□ 0.23
VPS9D1-203ENST00000563798 CCDC88CQ9P219 2028 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 FAM237BA0A1B0GVD1 139 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 OR2A25A4D2G3 310 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 MYO1CO00159 1063 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 PSIP1O75475 530 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 PKMP14618 531 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 PAMP19021 973 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 EMP3P54852 163 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 FOXL2P58012 376 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 CCZ1BP86790 482 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 CCZ1P86791 482 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 RAPSNQ13702 412 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 ARHGAP19Q14CB8 494 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 PLEKHN1Q494U1 663 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 CRB2Q5IJ48 1285 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 WASHC2DQ5SRD0 308 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 FHL5Q5TD97 284 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 NEPROQ6NW34 567 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 CNSTQ6PJW8 725 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 NEK10Q6ZWH5 1172 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 CILP2Q8IUL8 1156 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 OTUD6BQ8N6M0 293 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 MCUQ8NE86 351 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 OR9A1PQ8NGU1 263 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 SKA2Q8WVK7 121 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 CUEDC1Q9NWM3 386 aaPredicted RBP16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 RUVBL2Q9Y230 463 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 HS3ST3B1Q9Y662 390 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 FAM169AQ9Y6X4 670 aa16.47■□□□□ 0.23
VPS9D1-203ENST00000563798 HYKKA2RU49 373 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 TCP11X1B4DZS4 312 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 GOLGA8KD6RF30 607 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 GOLGA8TH3BQL2 631 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 SOCS6O14544 535 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 PHF2O75151 1096 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 AVILO75366 819 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 PSMB5P28074 263 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 CXCR5P32302 372 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 HSD17B2P37059 387 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 VSX2P58304 361 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 RELAQ04206 551 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 GPS1Q13098 491 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 CYP1B1Q16678 543 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 ANKRD20A4Q4UJ75 823 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 PRR30Q53SZ7 412 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 FRMPD2BQ6IN97 320 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 PRMT9Q6P2P2 845 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 FBXO42Q6P3S6 717 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 TTC27Q6P3X3 843 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 KIRREL2Q6UWL6 708 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 IGFL2Q6UWQ7 119 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 Q6ZS92 163 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 IQCKQ8N0W5 287 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 FBXO15Q8NCQ5 510 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 SMPDL3AQ92484 453 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 TM9SF4Q92544 642 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 BARD1Q99728 777 aaKnown RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 MIPEPQ99797 713 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 SLC29A3Q9BZD2 475 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 XAB2Q9HCS7 855 aaKnown RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 SLC6A20Q9NP91 592 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 SEMA3GQ9NS98 782 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 GALPQ9UBC7 116 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 CRYL1Q9Y2S2 319 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 PPP2R2CQ9Y2T4 447 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 NEU2Q9Y3R4 380 aa16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 RP1L1Q8IWN7 2480 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 PRRC2CQ9Y520 2896 aaKnown RBP16.46■□□□□ 0.23
VPS9D1-203ENST00000563798 NUP210LQ5VU65 1888 aa16.46■□□□□ 0.22
VPS9D1-203ENST00000563798 IGLV3-12A0A075B6K2 115 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 LOC105369274A0A096LPK9 316 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 LOC102723532A0A0G2JNH3 316 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 BLACEA4D250 179 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 KRT87PA6NCN2 255 aa16.45■□□□□ 0.22
VPS9D1-203ENST00000563798 SDR42E2A6NKP2 422 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms