RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SP140Q13342 867 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 KHDC1Q4VXA5 237 aaKnown RBP11.45□□□□□ -0.58
LDLR-212ENST00000560467 ACSBG2Q5FVE4 666 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 CENPLQ8N0S6 344 aaPredicted RBP11.45□□□□□ -0.58
LDLR-212ENST00000560467 RAB3IL1Q8TBN0 382 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 DENND1AQ8TEH3 1009 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 PPP4R1Q8TF05 950 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 ANKRD49Q8WVL7 239 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 PATE1Q8WXA2 126 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 MAGEB18Q96M61 343 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 OR2M4Q96R27 311 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 EGFL8Q99944 293 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 NSRP1Q9H0G5 558 aaKnown RBP11.45□□□□□ -0.58
LDLR-212ENST00000560467 EPN3Q9H201 632 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 OSGEPL1Q9H4B0 414 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 MANSC1Q9H8J5 431 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 MLXIPLQ9NP71 852 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 IGSF5Q9NSI5 407 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 CD274Q9NZQ7 290 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 SLC17A7Q9P2U7 560 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 COPG2Q9UBF2 871 aa11.45□□□□□ -0.58
LDLR-212ENST00000560467 TNPO3Q9Y5L0 923 aaKnown RBP11.45□□□□□ -0.58
LDLR-212ENST00000560467 NOTCH2Q04721 2471 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 IGHV5-10-1A0A0J9YXX1 117 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 RHPN2P1A8MT19 583 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 STMND1H3BQB6 276 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 RRP9O43818 475 aaKnown RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 KERAO60938 352 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 SLCO2B1O94956 709 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 PROCP04070 461 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 CEACAM5P06731 702 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 BPGMP07738 259 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 VIMP08670 466 aaKnown RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 ANXA5P08758 320 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 FGF3P11487 239 aaPredicted RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 ACP5P13686 325 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 SLC2A4P14672 509 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 LIFP15018 202 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 AK4P27144 223 aaPredicted RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 CSF2RBP32927 897 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 POLE2P56282 527 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 GNGT1P63211 74 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 GUCY1A3Q02108 690 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 ABRQ12979 859 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 STX3Q13277 289 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 TMEM164Q5U3C3 297 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 NKAIN2Q5VXU1 208 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 BORAQ6PGQ7 559 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 ZYG11AQ6WRX3 759 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 CDHR3Q6ZTQ4 885 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 UBE2R2Q712K3 238 aaPredicted RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 ZNF438Q7Z4V0 828 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 ISCA2Q86U28 154 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 C17orf82Q86X59 251 aaPredicted RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 NRROSQ86YC3 692 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 HOMEZQ8IX15 550 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 KIRREL3Q8IZU9 778 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 PLD6Q8N2A8 252 aaKnown RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 TCAIMQ8N3R3 496 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 CFAP61Q8NHU2 1237 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 ZDHHC1Q8WTX9 485 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 ATL1Q8WXF7 558 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 EXT2Q93063 718 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 NKD1Q969G9 470 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 GSDMCQ9BYG8 508 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 COG4Q9H9E3 785 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 PARVBQ9HBI1 364 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 KLC4Q9NSK0 619 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 TRNAU1APQ9NX07 287 aaKnown RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 AKAP7Q9P0M2 348 aaPredicted RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 TAAR2Q9P1P5 351 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 ANKMY1Q9P2S6 941 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 XPR1Q9UBH6 696 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 TSR3Q9UJK0 312 aaKnown RBP11.44□□□□□ -0.58
LDLR-212ENST00000560467 SUFUQ9UMX1 484 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 DNAJC16Q9Y2G8 782 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 HEBP2Q9Y5Z4 205 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 UNC13CQ8NB66 2214 aa11.44□□□□□ -0.58
LDLR-212ENST00000560467 RELNP78509 3460 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 NPEPPSL1A6NEC2 478 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 PDZK1P1A8MUH7 402 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 HGSO14964 777 aaPredicted RBP11.43□□□□□ -0.58
LDLR-212ENST00000560467 GPC4O75487 556 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 IPO13O94829 963 aaKnown RBP11.43□□□□□ -0.58
LDLR-212ENST00000560467 FUCA1P04066 466 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 MPSTP25325 297 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 CD1CP29017 333 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 HNMTP50135 292 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 AP1S2P56377 157 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 TIAL1Q01085 375 aaKnown RBP eCLIP11.43□□□□□ -0.58
LDLR-212ENST00000560467 KCNAB2Q13303 367 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 MPP2Q14168 576 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 TSNQ15631 228 aaKnown RBP11.43□□□□□ -0.58
LDLR-212ENST00000560467 IGFBP7Q16270 282 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 PDK4Q16654 411 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 PLA2G4EQ3MJ16 856 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 PYCR3Q53H96 274 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 CDKL4Q5MAI5 379 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 LIPMQ5VYY2 423 aa11.43□□□□□ -0.58
LDLR-212ENST00000560467 METRNLQ641Q3 311 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms