RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 SPHK2Q9NRA0 654 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 KLC4Q9NSK0 619 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 PNPOQ9NVS9 261 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.39□□□□□ -1.71
SRP54-212ENST00000556992 HCFC1R1Q9NWW0 138 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 THG1LQ9NWX6 298 aaKnown RBP4.39□□□□□ -1.71
SRP54-212ENST00000556992 IL17CQ9P0M4 197 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 MARCH4Q9P2E8 410 aaPredicted RBP4.39□□□□□ -1.71
SRP54-212ENST00000556992 KLHL42Q9P2K6 505 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 LNPEPQ9UIQ6 1025 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 HAO1Q9UJM8 370 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 SLC25A13Q9UJS0 675 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 PLA2G4CQ9UP65 541 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 CRYL1Q9Y2S2 319 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 PPIL1Q9Y3C6 166 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 PCDHB1Q9Y5F3 818 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 ACTL7AQ9Y615 435 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 DOCK3Q8IZD9 2030 aa4.39□□□□□ -1.71
SRP54-212ENST00000556992 GOLGA8QA0A0J9YX86 632 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 A0A0J9YYE9 177 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 RGSL1A5PLK6 1076 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 GOLGA8OA6NCC3 632 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 OR51F1A6NGY5 319 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 KRTAP29-1A8MX34 341 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 WASH3PC4AMC7 463 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 NEDD8-MDP1E9PL57 170 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SPECC1L-ADORA2AF8WAN1 911 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 GOLGA8NF8WBI6 632 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 RNASET2O00584 256 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 CCL22O00626 93 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 PER2O15055 1255 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SLC22A2O15244 555 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 GYG2O15488 501 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 MGRN1O60291 552 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 DIAPH2O60879 1101 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ZNF821O75541 412 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 LYPLA1O75608 230 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 TOP3BO95985 862 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 TRBC1P01850 177 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ASLP04424 464 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SRPRAP08240 638 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 FGF4P08620 206 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SBK3P0C264 359 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 THRAP10827 490 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SRCP12931 536 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 PKMP14618 531 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 TYRP14679 529 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 CD1DP15813 335 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ZNF7P17097 686 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 AOC1P19801 751 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 CHRM3P20309 590 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ITGALP20701 1170 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 HLA-FP30511 346 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ADSLP30566 484 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 NCALDP61601 193 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ELF3P78545 371 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 XIAPP98170 497 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 DLG1Q12959 904 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 CSHL1Q14406 222 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 PTPRCAPQ14761 206 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 PDGFRLQ15198 375 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 E2F5Q15329 346 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 TTC31Q49AM3 519 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 ZRANB3Q5FWF4 1079 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ZC3H12BQ5HYM0 836 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 RBM20Q5T481 1227 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 CES4AQ5XG92 561 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SEL1L3Q68CR1 1132 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 PTRHD1Q6GMV3 140 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 BRAT1Q6PJG6 821 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 GDPD4Q6W3E5 623 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 NAPRTQ6XQN6 538 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 TPRG1Q6ZUI0 275 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 USP45Q70EL2 814 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SNX20Q7Z614 316 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 RBM23Q86U06 439 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 ISCA2Q86U28 154 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 LDB1Q86U70 411 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 ADIPOR2Q86V24 386 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 LONP2Q86WA8 852 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 RBFAQ8N0V3 343 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 AHI1Q8N157 1196 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ARHGAP24Q8N264 748 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SPATA6LQ8N4H0 392 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SLC44A3Q8N4M1 653 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 KDM1BQ8NB78 822 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SIMC1Q8NDZ2 872 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 DTX3LQ8TDB6 740 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 WFIKKN2Q8TEU8 576 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 OSCP1Q8WVF1 389 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 LINC00476Q8WZB0 136 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SMG7Q92540 1137 aaKnown RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 KCNJ9Q92806 393 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 PPP2R3CQ969Q6 453 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 KIAA1191Q96A73 305 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 SKA1Q96BD8 255 aa4.38□□□□□ -1.71
SRP54-212ENST00000556992 ZNF707Q96C28 371 aaPredicted RBP4.38□□□□□ -1.71
SRP54-212ENST00000556992 CMTM5Q96DZ9 223 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms