RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TMEM125Q96AQ2 219 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 NXPE2Q96DL1 559 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 OR51E2Q9H255 320 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 RIOX1Q9H6W3 641 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 GAREM1Q9H706 876 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 MEAF6Q9HAF1 191 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 GALNT9Q9HCQ5 603 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 SLAMF7Q9NQ25 335 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 SLC9A2Q9UBY0 812 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 BRWD3Q6RI45 1802 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 SLC28A1O00337 649 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 TNNC2P02585 160 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 RLN2P04090 185 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CFHP08603 1231 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 EFNA1P20827 205 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 EIF2S3P41091 472 aaKnown RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 BAG6P46379 1132 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 ATP12AP54707 1039 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CLDN20P56880 219 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CAP1Q01518 475 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 EIF2S3LQ2VIR3 472 aaKnown RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 HFEQ30201 348 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 SOWAHCQ53LP3 525 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-226ENST00000556825 VASNQ6EMK4 673 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 IFNEQ86WN2 208 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 RNF130Q86XS8 419 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 KRT78Q8N1N4 520 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 DPP10Q8N608 796 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 XXYLT1Q8NBI6 393 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 ITFG1Q8TB96 612 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 LRRC58Q96CX6 371 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 RTP4Q96DX8 246 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 MCEEQ96PE7 176 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 RHNO1Q9BSD3 238 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 IMPAD1Q9NX62 359 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 CDH9Q9ULB4 789 aa13.48□□□□□ -0.25
SHMT2-226ENST00000556825 LGALS8O00214 317 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 GPX5O75715 221 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 RECQL5O94762 991 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 CHRM5P08912 532 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 FGF2P09038 288 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ATP5OP48047 213 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 SPCS3P61009 180 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 LIPEQ05469 1076 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF543Q08ER8 600 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 SSPNQ14714 243 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 TEAD4Q15561 434 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 RFX4Q33E94 735 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ARHGAP17Q68EM7 881 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ANKRD34AQ69YU3 496 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 OTOP1Q7RTM1 612 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 DMRTC2Q8IXT2 367 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 CDYL2Q8N8U2 506 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 WDR36Q8NI36 951 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 GAS2L1Q99501 681 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ZNF436Q9C0F3 470 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 DHX35Q9H5Z1 703 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 THUMPD1Q9NXG2 353 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 FBXO10Q9UK96 956 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 A0A1W2PRQ8 180 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 WDR27A2RRH5 827 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 CHMP2AO43633 222 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ORC5O43913 435 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 PAGE1O75459 146 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 LALBAP00709 142 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ITGB1P05556 798 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 URODP06132 367 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ADRB1P08588 477 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 LTA4HP09960 611 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 HRH2P25021 359 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 MAP2K3P46734 347 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 TKTL1P51854 596 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 PRMT2P55345 433 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 YBX1P67809 324 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 SLC25A11Q02978 314 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 GRM1Q13255 1194 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 PPP1R18Q6NYC8 613 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 BHLHB9Q6PI77 547 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 USP53Q70EK8 1073 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ADGRD2Q7Z7M1 963 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 NT5DC4Q86YG4 428 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 SULF1Q8IWU6 871 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 UBE2J2Q8N2K1 259 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 FBXL13Q8NEE6 735 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 PPP3R2Q96LZ3 170 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 HS6ST2Q96MM7 605 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 CGRRF1Q99675 332 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 CPNE1Q99829 537 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 TREX2Q9BQ50 279 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 TRIM54Q9BYV2 358 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ZCCHC2Q9C0B9 1178 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 TFB2MQ9H5Q4 396 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 EMC7Q9NPA0 242 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 SMPD4Q9NXE4 827 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 SPHK1Q9NYA1 384 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 DNAJB9Q9UBS3 223 aa13.47□□□□□ -0.25
SHMT2-226ENST00000556825 ZFC3H1O60293 1989 aaKnown RBP13.47□□□□□ -0.25
SHMT2-226ENST00000556825 SPATA31C2B4DYI2 1134 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 ANKRD28O15084 1053 aa13.46□□□□□ -0.25
SHMT2-226ENST00000556825 TBX3O15119 743 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms