RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LGALS3BPQ08380 585 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 TAF10Q12962 218 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 GAGE5Q13069 117 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 GAGE6Q13070 117 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 TNK1Q13470 666 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 NONOQ15233 471 aaKnown RBP eCLIP3.8□□□□□ -1.8
VPS29-205ENST00000548539 NPTX1Q15818 432 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 TAZQ16635 292 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 ODF4Q2M2E3 257 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 CCDC158Q5M9N0 1113 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 GBP6Q6ZN66 633 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 C9orf139Q6ZV77 190 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 NRARPQ7Z6K4 114 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 EXOC3L1Q86VI1 746 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 TIGD4Q8IY51 512 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 APCDD1Q8J025 514 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 LGI2Q8N0V4 545 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 EID3Q8N140 333 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 KBTBD8Q8NFY9 601 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 CTCFLQ8NI51 663 aaPredicted RBP3.8□□□□□ -1.8
VPS29-205ENST00000548539 HSD17B8Q92506 261 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 NSL1Q96IY1 281 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 PARK7Q99497 189 aaKnown RBP3.8□□□□□ -1.8
VPS29-205ENST00000548539 RHNO1Q9BSD3 238 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 MIS12Q9H081 205 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 Q9H8V8 135 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 LMAN1LQ9HAT1 526 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 ZDHHC2Q9UIJ5 367 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 ITGA11Q9UKX5 1188 aa3.8□□□□□ -1.8
VPS29-205ENST00000548539 TRIP12Q14669 1992 aaPredicted RBP3.8□□□□□ -1.8
VPS29-205ENST00000548539 IGSF1Q8N6C5 1336 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 C5orf52A6NGY3 159 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 CASTOR2A6NHX0 329 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 STX6O43752 255 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 PRAF2O60831 178 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 FCGR3BO75015 233 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ATP6AP2O75787 350 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 LUC7L3O95232 432 aaKnown RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 STAG3L1P0CL83 205 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 SPP1P10451 314 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 CDH3P22223 829 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 MARK3P27448 753 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 TCF7P36402 384 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 NKX2-1P43699 371 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 RASGEF1BQ0VAM2 473 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 DMP1Q13316 513 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 PTGISQ16647 500 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 MEP1BQ16820 701 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ANKRD20A4Q4UJ75 823 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ANKRD20A8PQ5CZ79 823 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ANKRD20A2Q5SQ80 823 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 OTUD3Q5T2D3 398 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 CYP4A22Q5TCH4 519 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ANKRD20A1Q5TYW2 823 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ANKRD20A3Q5VUR7 823 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 CYB5D1Q6P9G0 228 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 C11orf88Q6PI97 169 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ZNF771Q7L3S4 317 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 NUDT13Q86X67 352 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 RYBPQ8N488 228 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 METTL27Q8N6F8 245 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 RASGEF1AQ8N9B8 481 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ZNF383Q8NA42 475 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 ATAD1Q8NBU5 361 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 FIBINQ8TAL6 211 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 GRK7Q8WTQ7 553 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 DNASE1L2Q92874 299 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 RIT1Q92963 219 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 SCRN2Q96FV2 425 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 MLPHQ9BV36 600 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 UTP14AQ9BVJ6 771 aaKnown RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 FUT8Q9BYC5 575 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 DNAI2Q9GZS0 605 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 LAT2Q9GZY6 243 aa3.79□□□□□ -1.8
VPS29-205ENST00000548539 BICC1Q9H694 974 aaKnown RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 ZBTB20Q9HC78 741 aaPredicted RBP3.79□□□□□ -1.8
VPS29-205ENST00000548539 HEG1Q9ULI3 1381 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 A0A087WYN8 130 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 LOC101059948A0A1B0GTJ6 334 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 YDJCA8MPS7 323 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 IFIT3O14879 490 aaKnown RBP3.78□□□□□ -1.8
VPS29-205ENST00000548539 ARPC2O15144 300 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 PRKNO60260 465 aaPredicted RBP3.78□□□□□ -1.8
VPS29-205ENST00000548539 CIDEAO60543 219 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 FMO6PO60774 539 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 PLGP00747 810 aaPredicted RBP3.78□□□□□ -1.8
VPS29-205ENST00000548539 CRYAAP02489 173 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 VDRP11473 427 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 CA4P22748 312 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 MFAP3P55082 362 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 ERVFC1-1P60608 527 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 RPL36AP83881 106 aaKnown RBP3.78□□□□□ -1.8
VPS29-205ENST00000548539 C17orf67Q0P5P2 114 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 ILF2Q12905 390 aaKnown RBP3.78□□□□□ -1.8
VPS29-205ENST00000548539 ILF3Q12906 894 aaKnown RBP eCLIP3.78□□□□□ -1.8
VPS29-205ENST00000548539 RCN2Q14257 317 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 SQLEQ14534 574 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 TYSND1Q2T9J0 566 aa3.78□□□□□ -1.8
VPS29-205ENST00000548539 TXNRD3NBQ6F5E7 133 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms