RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ATMQ13315 3056 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 BSNQ9UPA5 3926 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 LOC105369274A0A096LPK9 316 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 LOC102723532A0A0G2JNH3 316 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 FAM95CA0A1B0GW59 222 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 EIF3FO00303 357 aaPredicted RBP9.35□□□□□ -0.91
YBX3-212ENST00000542002 CDC7O00311 574 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 ZNF749O43361 778 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 ZBTB14O43829 449 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 KDM1AO60341 852 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 SYF2O95926 243 aaKnown RBP9.35□□□□□ -0.91
YBX3-212ENST00000542002 CATP04040 527 aaKnown RBP9.35□□□□□ -0.91
YBX3-212ENST00000542002 CAPN1P07384 714 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 FURINP09958 794 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 IMPA1P29218 277 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 RORAP35398 523 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 DLSTP36957 453 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 GCGRP47871 477 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 ATP1A2P50993 1020 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 IL2P60568 153 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 ARHGAP19Q14CB8 494 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 EFTUD2Q15029 972 aaKnown RBP eCLIP9.35□□□□□ -0.91
YBX3-212ENST00000542002 LINC00303Q3SY05 128 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 ATP1A1-AS1Q5TC04 95 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 FRMPD2BQ6IN97 320 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 FAM45BPQ6NSW5 357 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 UGT3A1Q6NUS8 523 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 TMEM126BQ8IUX1 230 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 OR4N4Q8N0Y3 316 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 SPATA6LQ8N4H0 392 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 ESX1Q8N693 406 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 MNS1Q8NEH6 495 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 OR8K5Q8NH50 307 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 GABPB2Q8TAK5 448 aaPredicted RBP9.35□□□□□ -0.91
YBX3-212ENST00000542002 FAM45AQ8TCE6 357 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 FBF1Q8TES7 1133 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 CT55Q8WUE5 264 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 IFT81Q8WYA0 676 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 SMPDL3AQ92484 453 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 TTC9Q92623 222 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 ZUFSPQ96AP4 578 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 SLC22A18Q96BI1 424 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 PDLIM5Q96HC4 596 aaKnown RBP9.35□□□□□ -0.91
YBX3-212ENST00000542002 VPS39Q96JC1 886 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 PHACTR1Q9C0D0 580 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 RHOJQ9H4E5 214 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 PARVBQ9HBI1 364 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 FAM114A2Q9NRY5 505 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 PCMTD2Q9NV79 361 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 EURLQ9NYK6 297 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 SPATA7Q9P0W8 599 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.35□□□□□ -0.91
YBX3-212ENST00000542002 SERTAD3Q9UJW9 196 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 CORO1CQ9ULV4 474 aaPredicted RBP9.35□□□□□ -0.91
YBX3-212ENST00000542002 SH2B3Q9UQQ2 575 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 PCDHB3Q9Y5E6 796 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 KLK4Q9Y5K2 254 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 CHD6Q8TD26 2715 aa9.35□□□□□ -0.91
YBX3-212ENST00000542002 AHCTF1Q8WYP5 2266 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 HMX2A2RU54 273 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 TARM1B6A8C7 271 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 MEN1O00255 615 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 OR2B3O76000 313 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 MED26O95402 600 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 GSTA2P09210 222 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 TCN2P20062 427 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 ITGAXP20702 1163 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 ITGA1P56199 1179 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 SNRPNP63162 240 aaKnown RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 NFKB2Q00653 900 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 PRDX1Q06830 199 aaKnown RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 PDAP1Q13442 181 aaKnown RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 TSTA3Q13630 321 aaPredicted RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 GLE1Q53GS7 698 aaKnown RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 ZNF385CQ66K41 422 aaPredicted RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 SBSNQ6UWP8 590 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 DSELQ8IZU8 1212 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 DTWD1Q8N5C7 304 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 ZNF655Q8N720 491 aaPredicted RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 PPM1NQ8N819 430 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 MCOLN3Q8TDD5 553 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 SLC45A3Q96JT2 553 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 CCDC138Q96M89 665 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 ZNF285Q96NJ3 590 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 DPH7Q9BTV6 452 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 RAB11FIP5Q9BXF6 653 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 UNKQ9C0B0 810 aaKnown RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 ATG10Q9H0Y0 220 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 CHST8Q9H2A9 424 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 ACTR5Q9H9F9 607 aaPredicted RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 GPN2Q9H9Y4 310 aaPredicted RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 SYTL2Q9HCH5 934 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 ABCF3Q9NUQ8 709 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 NINJ2Q9NZG7 142 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 STOX2Q9P2F5 926 aaPredicted RBP9.34□□□□□ -0.91
YBX3-212ENST00000542002 PLCL2Q9UPR0 1127 aa9.34□□□□□ -0.91
YBX3-212ENST00000542002 OR2A25A4D2G3 310 aa9.33□□□□□ -0.92
YBX3-212ENST00000542002 E7EQ34 232 aa9.33□□□□□ -0.92
YBX3-212ENST00000542002 SLC16A5O15375 505 aa9.33□□□□□ -0.92
YBX3-212ENST00000542002 PHGDHO43175 533 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms