RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 KIF1CO43896 1103 aaKnown RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 NCK1P16333 377 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 SHMT2P34897 504 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 GRK6P43250 576 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 WNT7BP56706 349 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 FOLH1Q04609 750 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 SIM2Q14190 667 aaPredicted RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 KLHL24Q6TFL4 600 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 SUSD1Q6UWL2 747 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 ADGRG6Q86SQ4 1221 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 APCDD1Q8J025 514 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 OR4F6Q8NGB9 312 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 YIPF4Q9BSR8 244 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 S100A14Q9HCY8 104 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 HRASLS2Q9NWW9 162 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 GALNT8Q9NY28 637 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 IFT80Q9P2H3 777 aaPredicted RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 H3BQ06 376 aaPredicted RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 MT-ND1P03886 318 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 OXTRP30559 389 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 SLC26A3P40879 764 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 SLC34A3Q8N130 599 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 KIAA1191Q96A73 305 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 SIGLEC10Q96LC7 697 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 NSMCE3Q96MG7 304 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 MRPS7Q9Y2R9 242 aaKnown RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 TESMINQ9Y4I5 508 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 CHD4Q14839 1912 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 hCG_2039718K7EN88 272 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 JMJD7P0C870 316 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 CASP9P55211 416 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 DLG1Q12959 904 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 MARCH8Q5T0T0 291 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 FITM2Q8N6M3 262 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 ARL10Q8N8L6 244 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 MPP4Q96JB8 637 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 RC3H2Q9HBD1 1191 aaKnown RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 PHF11Q9UIL8 331 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 MYH1P12882 1939 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 TRPM3Q9HCF6 1732 aaPredicted RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 MANBAO00462 879 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 MAFKO60675 156 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 TPST2O60704 377 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 B4GALT2O60909 372 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 CCNB2O95067 398 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 MYCLP1P12525 358 aaPredicted RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 SCAPQ12770 1279 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 PTGES3Q15185 160 aaKnown RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 CST6Q15828 149 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 ENKURQ8TC29 256 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 KAT2AQ92830 837 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 CIB1Q99828 191 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 PAIP1Q9H074 479 aaKnown RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 THUMPD1Q9NXG2 353 aaKnown RBP13.76□□□□□ -0.21
USP3-204ENST00000540797 UTS2RQ9UKP6 389 aa13.76□□□□□ -0.21
USP3-204ENST00000540797 NPC1O15118 1278 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 TULP3O75386 442 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 NME6O75414 186 aaPredicted RBP13.75□□□□□ -0.21
USP3-204ENST00000540797 OR5F1O95221 314 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 PCDH1Q08174 1060 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 HYAL2Q12891 473 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 TRIM25Q14258 630 aaKnown RBP13.75□□□□□ -0.21
USP3-204ENST00000540797 MAPK11Q15759 364 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 NUP54Q7Z3B4 507 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 MRGPRX2Q96LB1 330 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 FCRL4Q96PJ5 515 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 STRA6Q9BX79 667 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 RASSF1Q9NS23 344 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 COL16A1Q07092 1604 aaPredicted RBP13.75□□□□□ -0.21
USP3-204ENST00000540797 IGLON5A6NGN9 336 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 K7ERQ8 282 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 MAGEB3O15480 346 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 TLX3O43711 291 aaPredicted RBP13.75□□□□□ -0.21
USP3-204ENST00000540797 GPIP06744 558 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 LSM3P62310 102 aaKnown RBP13.75□□□□□ -0.21
USP3-204ENST00000540797 TMEM126BQ8IUX1 230 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 FAM3CQ92520 227 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 AKTIPQ9H8T0 292 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 C8orf4Q9NR00 106 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 SERPINA1P01009 418 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 CD70P32970 193 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 RCVRNP35243 200 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 SLC30A8Q8IWU4 369 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 AMER2Q8N7J2 671 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 FIBINQ8TAL6 211 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 FAM81AQ8TBF8 368 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 TOP1MTQ969P6 601 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 SPATA7Q9P0W8 599 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 CFL2Q9Y281 166 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 FADS3Q9Y5Q0 445 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 B3GNT9Q6UX72 402 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 TMPRSS11AQ6ZMR5 421 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 TRPV1Q8NER1 839 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 KBTBD8Q8NFY9 601 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 GIPC3Q8TF64 312 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 RELTQ969Z4 430 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 ART5Q96L15 291 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 SLC35A5Q9BS91 424 aa13.75□□□□□ -0.21
USP3-204ENST00000540797 CRNNQ9UBG3 495 aaPredicted RBP13.75□□□□□ -0.21
USP3-204ENST00000540797 MCM8Q9UJA3 840 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms