RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TMEM221A6NGB7 291 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 RECQL5O94762 991 aaPredicted RBP12.79□□□□□ -0.36
LDLR-203ENST00000535915 MPC1LP0DKB6 136 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 CRHBPP24387 322 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 GZMMP51124 257 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 KCNAB2Q13303 367 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 GBX1Q14549 363 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 FRG2Q64ET8 278 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 OR4F3Q6IEY1 312 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 CES5AQ6NT32 575 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 SLC39A5Q6ZMH5 540 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 CYP2U1Q7Z449 544 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 TMEM179BQ7Z7N9 219 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 PLPP6Q8IY26 295 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 RNF175Q8N4F7 328 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 L3MBTL4Q8NA19 623 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 OR5K1Q8NHB7 308 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 MCOLN3Q8TDD5 553 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 ZNF296Q8WUU4 475 aaPredicted RBP12.79□□□□□ -0.36
LDLR-203ENST00000535915 TESCQ96BS2 214 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 ZNF641Q96N77 438 aaPredicted RBP12.79□□□□□ -0.36
LDLR-203ENST00000535915 FRG2BQ96QU4 278 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 CORO1BQ9BR76 489 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 EMILIN2Q9BXX0 1053 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 SLC46A2Q9BY10 475 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 DNAJC11Q9NVH1 559 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 USE1Q9NZ43 259 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 MAFFQ9ULX9 164 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 TMED5Q9Y3A6 229 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 PRPH2P23942 346 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 PTPN6P29350 595 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 DCTP40126 519 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 ENTPD1P49961 510 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 MAPK10P53779 464 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 ABHD18Q0P651 414 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 CHIT1Q13231 466 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 SPIDRQ14159 915 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 CBX2Q14781 532 aaPredicted RBP12.79□□□□□ -0.36
LDLR-203ENST00000535915 MEP1AQ16819 746 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 FGD3Q5JSP0 725 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 PLEKHS1Q5SXH7 462 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 ASTLQ6HA08 431 aaPredicted RBP12.79□□□□□ -0.36
LDLR-203ENST00000535915 DOK6Q6PKX4 331 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 PJA1Q8NG27 643 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 ELMO1Q92556 727 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 PYURFQ96I23 114 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 REXO5Q96IC2 774 aaKnown RBP12.79□□□□□ -0.36
LDLR-203ENST00000535915 EBPLQ9BY08 206 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 CCL26Q9Y258 94 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 WDR37Q9Y2I8 494 aa12.79□□□□□ -0.36
LDLR-203ENST00000535915 NEDD8-MDP1E9PL57 170 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 WNT9AO14904 365 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 MAGEB3O15480 346 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 FOXD2O60548 495 aaPredicted RBP12.78□□□□□ -0.36
LDLR-203ENST00000535915 PRAMEF4O60810 478 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 ABCB7O75027 752 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 FKTNO75072 461 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 AMD1P17707 334 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 MATN1P21941 496 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 POLR2LP62875 67 aaKnown RBP12.78□□□□□ -0.36
LDLR-203ENST00000535915 SP140Q13342 867 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 ARHGEF6Q15052 776 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 PRAMEF9Q5VWM5 478 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 NOXRED1Q6NXP6 359 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 TMEM25Q86YD3 366 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 OR13F1Q8NGS4 319 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 HDAC2Q92769 488 aaKnown RBP12.78□□□□□ -0.36
LDLR-203ENST00000535915 SCAMP4Q969E2 229 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 VWCEQ96DN2 955 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 NRBF2Q96F24 287 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 C3orf18Q9UK00 162 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 TRIM17Q9Y577 477 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 LTBP2Q14767 1821 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 EVPLLA8MZ36 301 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 GFYI3L273 518 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 ZNF682O95780 498 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 C8AP07357 584 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 HOXB9P17482 250 aaPredicted RBP12.78□□□□□ -0.36
LDLR-203ENST00000535915 KIR3DL1P43629 444 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 SLC14A1Q13336 389 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 GDPD4Q6W3E5 623 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 ELMOD1Q8N336 334 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 FRS2Q8WU20 508 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 SGCDQ92629 289 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 BBS2Q9BXC9 721 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 RC3H2Q9HBD1 1191 aaKnown RBP12.78□□□□□ -0.36
LDLR-203ENST00000535915 PLGRKTQ9HBL7 147 aa12.78□□□□□ -0.36
LDLR-203ENST00000535915 LOC100130705A0A1B0GUX0 176 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 KPNA5O15131 536 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 SLC16A5O15375 505 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 FUT4P22083 530 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 MAP4P27816 1152 aaKnown RBP12.77□□□□□ -0.36
LDLR-203ENST00000535915 AP1S2P56377 157 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 SKIV2LQ15477 1246 aaKnown RBP12.77□□□□□ -0.36
LDLR-203ENST00000535915 C6orf141Q5SZD1 244 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 XAF1Q6GPH4 301 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 SYT12Q8IV01 421 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 ZDHHC21Q8IVQ6 265 aa12.77□□□□□ -0.36
LDLR-203ENST00000535915 CHDHQ8NE62 594 aaPredicted RBP12.77□□□□□ -0.36
LDLR-203ENST00000535915 CSGALNACT1Q8TDX6 532 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms