RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SLC28A3Q9HAS3 691 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 GPR108Q9NPR9 543 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 TRNAU1APQ9NX07 287 aaKnown RBP4.63□□□□□ -1.67
CD44-220ENST00000525688 MTMR10Q9NXD2 777 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 TMOD3Q9NYL9 352 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 IL36RNQ9UBH0 155 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 FBXW11Q9UKB1 542 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 NHSQ6T4R5 1651 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 RGPD3A6NKT7 1758 aaPredicted RBP4.63□□□□□ -1.67
CD44-220ENST00000525688 RGPD4Q7Z3J3 1758 aa4.63□□□□□ -1.67
CD44-220ENST00000525688 RREB1Q92766 1687 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 C1orf226A1L170 272 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 OOEPA6NGQ2 149 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 I6L893 689 aaPredicted RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 RASGRF2O14827 1237 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 IFIT3O14879 490 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 CETN3O15182 167 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 ADAMDEC1O15204 470 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 OGG1O15527 345 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 GMFGO60234 142 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 GPRIN2O60269 458 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 ZNF254O75437 659 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 TADA2AO75478 443 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 AKR7A3O95154 331 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 YEATS4O95619 227 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 FGFR1OPO95684 399 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 PTBP3O95758 552 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 PENKP01210 267 aaPredicted RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 S100A9P06702 114 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 CYC1P08574 325 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 UROSP10746 265 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 PRF1P14222 555 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 TRIM21P19474 475 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 ANXA7P20073 488 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 TNFRSF1BP20333 461 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 GALP22466 123 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 TCEA1P23193 301 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 GLRA2P23416 452 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 DNAJB1P25685 340 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 TAGLN2P37802 199 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 ME1P48163 572 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 CCR3P51677 355 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 HMGA2P52926 109 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 HADHBP55084 474 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 SNU13P55769 128 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 P2RX3P56373 397 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 HAND2P61296 217 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 IL11RAQ14626 422 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 CCDC57Q2TAC2 916 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 AARDQ4LEZ3 155 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 MTX3Q5HYI7 312 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 SPATA46Q5T0L3 261 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 AP1ARQ63HQ0 302 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 SIGIRRQ6IA17 410 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 NEK5Q6P3R8 708 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 SYCE2Q6PIF2 218 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 B3GNT6Q6ZMB0 384 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 ARMCX2Q7L311 632 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 ZNF367Q7RTV3 350 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 PALB2Q86YC2 1186 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 SRRM1Q8IYB3 904 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 ZCCHC7Q8N3Z6 543 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 AADATQ8N5Z0 425 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 BANPQ8N9N5 519 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 ST7LQ8TDW4 575 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 GANCQ8TET4 914 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 TRIB2Q92519 343 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 MOAP1Q96BY2 351 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 C8orf76Q96K31 380 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 EGLN2Q96KS0 407 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 RMDN2Q96LZ7 410 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 GDAP1L1Q96MZ0 367 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 BCL7BQ9BQE9 202 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 KIFC3Q9BVG8 833 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 TMPRSS5Q9H3S3 457 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 CATSPERBQ9H7T0 1116 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 SYTL2Q9HCH5 934 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 KRCC1Q9NPI7 259 aaPredicted RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 IARS2Q9NSE4 1012 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 ARHGEF38Q9NXL2 777 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 OR6C3Q9NZP0 311 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 R3HDM2Q9Y2K5 976 aaKnown RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 LIPGQ9Y5X9 500 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 CLIC4Q9Y696 253 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 TEX264Q9Y6I9 313 aa4.62□□□□□ -1.67
CD44-220ENST00000525688 V9GYY5 206 aaPredicted RBP4.62□□□□□ -1.67
CD44-220ENST00000525688 IGLV5-39A0A0G2JS06 123 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 A0A1B0GVM2 712 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 A0A1B0GWJ7 208 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 DENND3A2RUS2 1198 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 NCF1BA6NI72 391 aaPredicted RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 NCF1CA8MVU1 366 aaPredicted RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 H0YIN7 160 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 CCDC188H7C350 402 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 VCYO14598 125 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 PPEF2O14830 753 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 ATP2A1O14983 1001 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 SMAD6O43541 496 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 BUB1O43683 1085 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 NUDT21O43809 227 aaKnown RBP4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms