RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 GOLPH3Q9H4A6 298 aa19.38■□□□□ 0.69
SQSTM1-215ENST00000514093 NLE1Q9NVX2 485 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-215ENST00000514093 ZC3H7BQ9UGR2 993 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-215ENST00000514093 GTF3C3Q9Y5Q9 886 aa19.38■□□□□ 0.69
SQSTM1-215ENST00000514093 FITM1A5D6W6 292 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 OR51F1A6NGY5 319 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 CLDN14O95500 239 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 CAPN3P20807 821 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 MARCKSL1P49006 195 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 SMSP52788 366 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 TLE4Q04727 773 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 CNSTQ6PJW8 725 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 C19orf43Q9BQ61 176 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 LUC7LQ9NQ29 371 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 INTS7Q9NVH2 962 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 NEU2Q9Y3R4 380 aa19.37■□□□□ 0.69
SQSTM1-215ENST00000514093 LOC105369274A0A096LPK9 316 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 LOC102723532A0A0G2JNH3 316 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 H7C0S8 307 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 NRP2O60462 931 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 ZRANB2O95218 330 aaKnown RBP eCLIP19.36■□□□□ 0.691e-11■■□□□ 13.3
SQSTM1-215ENST00000514093 BMP10O95393 424 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 EIF2S1P05198 315 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 ITGAMP11215 1152 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 EMP2P54851 167 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 GRB7Q14451 532 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 LUZP1Q86V48 1076 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 VRK3Q8IV63 474 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 OR4N4Q8N0Y3 316 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 SUN3Q8TAQ9 357 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 SLC22A18Q96BI1 424 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 CHP1Q99653 195 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 FAM118BQ9BPY3 351 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 YIPF2Q9BWQ6 316 aa19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 PIH1D1Q9NWS0 290 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-215ENST00000514093 IGHV1-45A0A0A0MS14 117 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 A0A0J9YVX5 310 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 IDSB3KWA1 339 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 PSTPIP1O43586 416 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 OR1I1O60431 355 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 PRAMEF2O60811 474 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 S1PR4O95977 384 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 FDXRP22570 491 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 CXCR2P25025 360 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 POU6F1Q14863 301 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 RCOR2Q8IZ40 523 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 CHTF18Q8WVB6 975 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 C14orf79Q96F83 325 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 GBP4Q96PP9 640 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 ARNT2Q9HBZ2 717 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 ALG6Q9Y672 507 aa19.35■□□□□ 0.69
SQSTM1-215ENST00000514093 NCOA6Q14686 2063 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 MACROD2A1Z1Q3 448 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 OR5H15A6NDH6 313 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 FAM227AF5H4B4 570 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 QSOX1O00391 747 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 ZNHIT1O43257 154 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 SRPX2O60687 465 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 MBD3O95983 291 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 OR56A5P0C7T3 313 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 AGAP20933 346 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 FBLP22087 321 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 MSNP26038 577 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 PLOD1Q02809 727 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 HSPA14Q0VDF9 509 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 ITIH4Q14624 930 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 DNAJC21Q5F1R6 531 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 CCDC181Q5TID7 509 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 BBS12Q6ZW61 710 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 OR2L8Q8NGY9 312 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 ACTL9Q8TC94 416 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 TSPAN10Q9H1Z9 355 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 ENAMQ9NRM1 1142 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 STMN3Q9NZ72 180 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 IFNKQ9P0W0 207 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 SLC39A10Q9ULF5 831 aa19.34■□□□□ 0.69
SQSTM1-215ENST00000514093 APOC4-APOC2K7ER74 178 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 APOC2P02655 101 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 PSMB5P28074 263 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 CCR7P32248 378 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 ST13P50502 369 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 ZNF33BQ06732 778 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 ABHD17BQ5VST6 288 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 PRMT9Q6P2P2 845 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 PACS1Q6VY07 963 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 NEK10Q6ZWH5 1172 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 KATNAL2Q8IYT4 538 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 SLC22A15Q8IZD6 547 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 STYXQ8WUJ0 223 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 ZUFSPQ96AP4 578 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 MAGED4Q96JG8 741 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 MIPEPQ99797 713 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 ANP32EQ9BTT0 268 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 MCCC2Q9HCC0 563 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 TRPC4Q9UBN4 977 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 FEZ2Q9UHY8 353 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 MEMO1Q9Y316 297 aa19.33■□□□□ 0.68
SQSTM1-215ENST00000514093 IGLV3-12A0A075B6K2 115 aa19.32■□□□□ 0.68
SQSTM1-215ENST00000514093 TPM4P67936 248 aa19.32■□□□□ 0.68
SQSTM1-215ENST00000514093 DARS2Q6PI48 645 aaKnown RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms