RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 LPAR3Q9UBY5 353 aa3.83□□□□□ -1.8
NEDD4-209ENST00000508871 TESQ9UGI8 421 aaKnown RBP3.83□□□□□ -1.8
NEDD4-209ENST00000508871 PLXNB2O15031 1838 aa3.83□□□□□ -1.8
NEDD4-209ENST00000508871 PVALEFA0A1B0GWK0 134 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 C1orf226A1L170 272 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 NPIPB15A6NHN6 443 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ENO4A6NNW6 628 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 LACTBL1A8MY62 500 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HAT1O14929 419 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 VEGFDO43915 354 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PRAMEF11O60813 436 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CLN5O75503 358 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 LRIG2O94898 1065 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 OR5F1O95221 314 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PMCHP20382 165 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PTGS1P23219 599 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 SREBF1P36956 1147 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CHRNA4P43681 627 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CCNHP51946 323 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HADHBP55084 474 aaKnown RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 YWHAGP61981 247 aaKnown RBP eCLIP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 MYL5Q02045 173 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 FPGSQ05932 587 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 GRB14Q14449 540 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 FAM187BQ17R55 369 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HNRNPA1L2Q32P51 320 aaKnown RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF618Q5T7W0 954 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 IL23RQ5VWK5 629 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 LCTLQ6UWM7 567 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ARHGAP12Q8IWW6 846 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 METTL4Q8N3J2 472 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 RDM1Q8NG50 284 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 DNAJB3Q8WWF6 145 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CRYGNQ8WXF5 182 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PGM2Q96G03 612 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CAPZA3Q96KX2 299 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 FAM20AQ96MK3 541 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 AGAP3Q96P47 875 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 NPAS2Q99743 824 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 RAB33BQ9H082 229 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 NECTIN3Q9NQS3 549 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 USE1Q9NZ43 259 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CNIH4Q9P003 139 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HCN3Q9P1Z3 774 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 WDR81Q562E7 1941 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 KIAA1217Q5T5P2 1943 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 DDTLA6NHG4 134 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 OR6C70A6NIJ9 312 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 SAC3D1A6NKF1 404 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PRR5-ARHGAP8B1AHC4 643 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 BTBD19C9JJ37 291 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 H0YJX3 145 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PSMD12O00232 456 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ARPC3O15145 178 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PAPSS1O43252 624 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 NUAK1O60285 661 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ZBTB7AO95365 584 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ERVK-10P10266 1014 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 SLC2A3P11169 496 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HPGDP15428 266 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF182P17025 639 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HOXA13P31271 388 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 GARSP41250 739 aaKnown RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ACADSBP45954 432 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PPP3CCP48454 512 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 KDSRQ06136 332 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 EGR3Q06889 387 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 TNK2Q07912 1038 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ZNF628Q5EBL2 1059 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 LPCAT4Q643R3 524 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 GPAT2Q6NUI2 795 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 TMEM174Q8WUU8 243 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CKAP2Q8WWK9 683 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 OIT3Q8WWZ8 545 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 RPL10LQ96L21 214 aaKnown RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 FAM49AQ9H0Q0 323 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 KCNMB3Q9NPA1 279 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ING3Q9NXR8 418 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 PSMC3IPQ9P2W1 217 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 FBXO4Q9UKT5 387 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 KCNK6Q9Y257 313 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 U3KQV3 271 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CST3P01034 146 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 GH2P01242 217 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 FTH1P02794 183 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 AMHP03971 560 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HIST1H2ABP04908 130 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 SFTPBP07988 381 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ANXA5P08758 320 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 FTH1P19P0C7X4 201 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 SPATA31D3P0C874 917 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CYP2C8P10632 490 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 RNH1P13489 461 aaKnown RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HIST1H2ADP20671 130 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 F8A1P23610 371 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 CCND2P30279 289 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 HSD17B4P51659 736 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 SOX10P56693 466 aa3.82□□□□□ -1.8
NEDD4-209ENST00000508871 YBEYP58557 167 aaPredicted RBP3.82□□□□□ -1.8
NEDD4-209ENST00000508871 ENPEPQ07075 957 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms