RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 RGS6P49758 472 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 ABHD18Q0P651 414 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CAMK2GQ13555 558 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 C18orf21Q32NC0 220 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CEP78Q5JTW2 689 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CYP4Z2PQ8N1L4 340 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 DNAJC22Q8N4W6 341 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CD200R1Q8TD46 325 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CDCA5Q96FF9 252 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 ARPC5LQ9BPX5 153 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 IRF2BPLQ9H1B7 796 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 KCNH6Q9H252 994 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 TRMT6Q9UJA5 497 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 KLK4Q9Y5K2 254 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 A0A0G2JLL6 359 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 ICMTO60725 284 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 NIPSNAP2O75323 286 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CYP2A7P20853 494 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 ENDOUP21128 410 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CD9P21926 228 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 SOX6P35712 828 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 ZNF140P52738 457 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 GTF2H2Q13888 395 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 GTF2H2CQ6P1K8 395 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 NEK5Q6P3R8 708 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 PRRT2Q7Z6L0 340 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 ZNF683Q8IZ20 524 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 FLCNQ8NFG4 579 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 GGHQ92820 318 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CHCHD6Q9BRQ6 235 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 GABARAPL3Q9BY60 117 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 ZNF408Q9H9D4 720 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 PRDM5Q9NQX1 630 aaPredicted RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 MAN2B2Q9Y2E5 1009 aa16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 SAMHD1Q9Y3Z3 626 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-211ENST00000506690 CLCA1A8K7I4 914 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 hCG_2039718K7EN88 272 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 CTDSP2O14595 271 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 RGS14O43566 566 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 OTCP00480 354 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 FABP3P05413 133 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 ADORA3P0DMS8 318 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 PKMP14618 531 aaKnown RBP16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 RHOQP17081 205 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 PTPN6P29350 595 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 RRM2P31350 389 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 VLDLRP98155 873 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 WDR45BQ5MNZ6 344 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 AFTPHQ6ULP2 937 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 SUSD1Q6UWL2 747 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 ZNF551Q7Z340 670 aaPredicted RBP16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 NOXA1Q86UR1 476 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 HORMAD1Q86X24 394 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 RTP3Q9BQQ7 232 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 TMEM248Q9NWD8 314 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 ASIC5Q9NY37 505 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 TNPO3Q9Y5L0 923 aaKnown RBP16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 MEIOCA2RUB1 952 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 SLITRK5O94991 958 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 YES1P07947 543 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 TIE1P35590 1138 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 PBX3P40426 434 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 ARMCX4Q5H9R4 360 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 CACHD1Q5VU97 1274 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 CARNMT1Q8N4J0 409 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 ZFYVE19Q96K21 471 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 RIPOR3Q96MK2 946 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 ACOXLQ9NUZ1 547 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 SPASTQ9UBP0 616 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 ZMYM5Q9UJ78 669 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 CFL2Q9Y281 166 aa16.65■□□□□ 0.26
SQSTM1-211ENST00000506690 A0A075B6Q4 140 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 KRT87PA6NCN2 255 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 NAT1P18440 290 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 PCSK1P29120 753 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 HNF4AP41235 474 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 RPS5P46782 204 aaKnown RBP16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 CDKN1CP49918 316 aaPredicted RBP16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 ALFQ53S48 1182 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 TOR1AIP1Q5JTV8 583 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 CTSL3PQ5NE16 218 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 MILR1Q7Z6M3 343 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 OR8H2Q8N162 312 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 PGBD3Q8N328 593 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 TMEM132CQ8N3T6 1108 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 ST13P5Q8NFI4 369 aaPredicted RBP16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 POLR1EQ9GZS1 481 aaKnown RBP16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 IPPKQ9H8X2 491 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 WDR70Q9NW82 654 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 RRN3P2A6NIE6 340 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 CXCL11O14625 94 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 KIAA0513O60268 411 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 PTHP01270 115 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 VIPP01282 170 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 TNFSF8P32971 234 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 ADCYAP1R1P41586 468 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 GNPDA1P46926 289 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 SLAMF1Q13291 335 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 IRF3Q14653 427 aa16.64■□□□□ 0.25
SQSTM1-211ENST00000506690 TTLL9Q3SXZ7 439 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms