RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 GPR149Q86SP6 731 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 GPR180Q86V85 440 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 ZDHHC13Q8IUH4 622 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.65□□□□□ -0.54
NUP54-202ENST00000502850 ADHFE1Q8IWW8 467 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 OR10A6Q8NH74 314 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 FAM110BQ8TC76 370 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 MAGEE2Q8TD90 523 aaPredicted RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 SP7Q8TDD2 431 aaPredicted RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 FRS2Q8WU20 508 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 BTN2A2Q8WVV5 523 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 NCLNQ969V3 563 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 NMD3Q96D46 503 aaKnown RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 FAM120BQ96EK7 910 aaKnown RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 SLC47A1Q96FL8 570 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 REXO5Q96IC2 774 aaKnown RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 CPPED1Q9BRF8 314 aaPredicted RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 OSBPL10Q9BXB5 764 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 PAIP1Q9H074 479 aaKnown RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 NKX2-4Q9H2Z4 354 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 EPHX3Q9H6B9 360 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 KAT8Q9H7Z6 458 aaKnown RBP11.65□□□□□ -0.54
NUP54-202ENST00000502850 SLC28A3Q9HAS3 691 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 TLR9Q9NR96 1032 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 HCFC1R1Q9NWW0 138 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 LIMD1Q9UGP4 676 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 ZNHIT2Q9UHR6 403 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 ADGRE2Q9UHX3 823 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 CD84Q9UIB8 345 aa11.65□□□□□ -0.54
NUP54-202ENST00000502850 EVPLLA8MZ36 301 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 H0Y858 1186 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CLGNO14967 610 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 MOSPD3O75425 235 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 OR6B1O95007 311 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 SDC1P18827 310 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CTNNB1P35222 781 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 MTHFRP42898 656 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 KIR3DL1P43629 444 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 ASMTP46597 345 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 PRLHRP49683 370 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CDK9P50750 372 aaKnown RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 LRRC74AQ0VAA2 488 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CHIT1Q13231 466 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 TTC23Q5W5X9 447 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 ERICH5Q6P6B1 374 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 USP51Q70EK9 711 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CYP2U1Q7Z449 544 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 HSD11B1LQ7Z5J1 315 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 GPR141Q7Z602 305 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CALHM3Q86XJ0 350 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CLEC4FQ8N1N0 589 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 KRTCAP2Q8N6L1 136 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 GLYATL1Q969I3 302 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 REPS1Q96D71 796 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 TCEAL4Q96EI5 215 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 MRGPRX3Q96LB0 322 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 P2RY13Q9BPV8 354 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 SPATA9Q9BWV2 254 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 PIF1Q9H611 641 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 BRF2Q9HAW0 419 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 TIMMDC1Q9NPL8 285 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 USE1Q9NZ43 259 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 GPRC5BQ9NZH0 403 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 TMPRSS11EQ9UL52 423 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 SAMD4AQ9UPU9 718 aaKnown RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 RUVBL1Q9Y265 456 aaKnown RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 YBX2Q9Y2T7 364 aaKnown RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 AP1M2Q9Y6Q5 423 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 RFXANKO14593 260 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 ADH1CP00326 375 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 PRNPP04156 253 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 ELFN1P0C7U0 828 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 THRBP10828 461 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 BMP1P13497 986 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 TIMP2P16035 220 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 AMD1P17707 334 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CDH2P19022 906 aaPredicted RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 BMPR1AP36894 532 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 MMP12P39900 470 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 ADARB1P78563 741 aaKnown RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 MTAPQ13126 283 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 RFX4Q33E94 735 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 PLA2G4EQ3MJ16 856 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CYBRD1Q53TN4 286 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 ARSIQ5FYB1 569 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 CCNYL2Q5T2Q4 361 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 GRHL2Q6ISB3 625 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 NOXRED1Q6NXP6 359 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 NEK5Q6P3R8 708 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 RFLNAQ6ZTI6 216 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 SERPINA11Q86U17 422 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 MSRB3Q8IXL7 192 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 FBXO15Q8NCQ5 510 aaPredicted RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 TMBIM1Q969X1 311 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 AURKBQ96GD4 344 aaPredicted RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 MPP4Q96JB8 637 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 HHIPQ96QV1 700 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 GAS2L1Q99501 681 aaPredicted RBP11.64□□□□□ -0.55
NUP54-202ENST00000502850 RAD9AQ99638 391 aa11.64□□□□□ -0.55
NUP54-202ENST00000502850 RBM4BQ9BQ04 359 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms