RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CHD9Q3L8U1 2897 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 SZT2Q5T011 3432 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 MANBAO00462 879 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 RGS14O43566 566 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 STK16O75716 305 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 CLPXO76031 633 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 PDYNP01213 254 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 INHBBP09529 407 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 CSF2RAP15509 400 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 TACR1P25103 407 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 PPP3CCP48454 512 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 DGKEP52429 567 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 PWP1Q13610 501 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 RAPSNQ13702 412 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 C6orf141Q5SZD1 244 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 Q6ZPB1 254 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 USP51Q70EK9 711 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 MSRB3Q8IXL7 192 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 RIMKLAQ8IXN7 391 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 EGLN2Q96KS0 407 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 HTATIP2Q9BUP3 242 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 ACPTQ9BZG2 426 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 TMEM39AQ9NV64 488 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 PSME2Q9UL46 239 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF451Q9Y4E5 1061 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 SNX5Q9Y5X3 404 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 LRG1P02750 347 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 RAP2AP10114 183 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 AQP1P29972 269 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 AKT1P31749 480 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 PHC1P78364 1004 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 CNKSR3Q6P9H4 555 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 MACC1Q6ZN28 852 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 UBE2R2Q712K3 238 aaPredicted RBP16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 TMC8Q8IU68 726 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 DPP10Q8N608 796 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF366Q8N895 744 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 HPS1Q92902 700 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 PPP3R2Q96LZ3 170 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 COPS8Q99627 209 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 B4GALT6Q9UBX8 382 aa16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 EIF3LQ9Y262 564 aaKnown RBP16.08■□□□□ 0.17
CCDC88B-210ENST00000494566 ABCB7O75027 752 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 PGRP06401 933 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 C8AP07357 584 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 GNPDA1P46926 289 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 IFITM3Q01628 133 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 MOGQ16653 247 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 MPPE1Q53F39 396 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 LAIR2Q6ISS4 152 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 C22orf39Q6P5X5 142 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 OTOP2Q7RTS6 562 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 RAVER1Q8IY67 606 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 ZNF689Q96CS4 500 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 YME1L1Q96TA2 773 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 BBS2Q9BXC9 721 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 SUV39H2Q9H5I1 410 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 NINQ8N4C6 2090 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 PLXNB3Q9ULL4 1909 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 KRBA1A5PL33 1030 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 NADKO95544 446 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 C1SP09871 688 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 BCKDHAP12694 445 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 JAK1P23458 1154 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 CD97P48960 835 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 SEPHS1P49903 392 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 NKX2-5P52952 324 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 LAIR1Q6GTX8 287 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 FIBINQ8TAL6 211 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 LZICQ8WZA0 190 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 NRBF2Q96F24 287 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 OR52E6Q96RD3 313 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 CDH7Q9ULB5 785 aa16.08■□□□□ 0.16
CCDC88B-210ENST00000494566 TRIM64CA6NLI5 447 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SOCS5O75159 536 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SERPINB7O75635 380 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 WDR47O94967 919 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 LATS1O95835 1130 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 CCL5P13501 91 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 MRPL19P49406 292 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 VEGFBP49765 207 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 GP2P55259 537 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SNRPD1P62314 119 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 CYP4F3Q08477 520 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SYT16Q17RD7 645 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 TPRG1Q6ZUI0 275 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 HTR3DQ70Z44 454 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 FAM217AQ8IXS0 508 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 ST13P5Q8NFI4 369 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 MCOLN3Q8TDD5 553 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SELENOMQ8WWX9 145 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 HTRA1Q92743 480 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 SCRN2Q96FV2 425 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 ZBTB18Q99592 522 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 EBPLQ9BY08 206 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 LINC00597Q9H2U6 94 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 PAK6Q9NQU5 681 aaPredicted RBP16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 LOC100130705A0A1B0GUX0 176 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 OR2AG2A6NM03 316 aa16.07■□□□□ 0.16
CCDC88B-210ENST00000494566 CXCR6O00574 342 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms