RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 ADAP2Q9NPF8 381 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 OR14I1A6ND48 311 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 CLUP10909 449 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 PRPS1L1P21108 318 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 GRK6P43250 576 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 THOC7Q6I9Y2 204 aaKnown RBP17.21■□□□□ 0.35
NPHP4-209ENST00000489180 SLC22A16Q86VW1 577 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 OXR1Q8N573 874 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 C1orf52Q8N6N3 182 aaKnown RBP17.21■□□□□ 0.35
NPHP4-209ENST00000489180 BIRC7Q96CA5 298 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 JSRP1Q96MG2 331 aaPredicted RBP17.21■□□□□ 0.35
NPHP4-209ENST00000489180 SLC22A4Q9H015 551 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 FLRT1Q9NZU1 646 aa17.21■□□□□ 0.35
NPHP4-209ENST00000489180 AXIN1O15169 862 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 B3GALT2O43825 422 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 CSN2P05814 226 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 DSTNP60981 165 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 DPY19L1Q2PZI1 675 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 DEFB115Q30KQ5 88 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 GOLGA7Q7Z5G4 137 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 TMEM110Q86TL2 294 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 KLHL36Q8N4N3 616 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 TMED9Q9BVK6 235 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 ITPAQ9BY32 194 aa17.21■□□□□ 0.34
NPHP4-209ENST00000489180 PAK6Q9NQU5 681 aaPredicted RBP17.21■□□□□ 0.34
NPHP4-209ENST00000489180 RIMBP3CA6NJZ7 1639 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 RIMBP3BA6NNM3 1639 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 RIMBP3Q9UFD9 1639 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 H0YGN5 161 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 BCHEP06276 602 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 KLK1P06870 262 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 CHRNA6Q15825 494 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 OR2T5Q6IEZ7 315 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 VITQ6UXI7 678 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 NXPE1Q8N323 547 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 OR2T29Q8NH02 315 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 DNAJB8Q8NHS0 232 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 CST11Q9H112 138 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 ZCCHC3Q9NUD5 404 aaKnown RBP17.2■□□□□ 0.34
NPHP4-209ENST00000489180 NFS1Q9Y697 457 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 OR6C70A6NIJ9 312 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 PRAMEF12O95522 483 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 G6PDP11413 515 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 IL12BP29460 328 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 VLDLRP98155 873 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 TPRG1LQ5T0D9 272 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 NFKBIDQ8NI38 313 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 LRRC20Q8TCA0 184 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 EFHD2Q96C19 240 aaPredicted RBP17.2■□□□□ 0.34
NPHP4-209ENST00000489180 RIOK2Q9BVS4 552 aaKnown RBP17.2■□□□□ 0.34
NPHP4-209ENST00000489180 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.2■□□□□ 0.34
NPHP4-209ENST00000489180 HS3ST4Q9Y661 456 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 SMIM30A4D0T7 59 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 BDKRB1P46663 353 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 SLC18A1P54219 525 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.2■□□□□ 0.34
NPHP4-209ENST00000489180 ZNF627Q7L945 461 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 PLEKHO2Q8TD55 490 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 KCTD7Q96MP8 289 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 WRBO00258 174 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 CARD16Q5EG05 197 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 MARCH9Q86YJ5 346 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 OR2L3Q8NG85 312 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 ZNF641Q96N77 438 aaPredicted RBP17.2■□□□□ 0.34
NPHP4-209ENST00000489180 OXCT2Q9BYC2 517 aaPredicted RBP17.2■□□□□ 0.34
NPHP4-209ENST00000489180 ERVW-1Q9UQF0 538 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 PSAT1Q9Y617 370 aa17.2■□□□□ 0.34
NPHP4-209ENST00000489180 KLF11O14901 512 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 ERVK-21P61565 698 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 PITPNAQ00169 270 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 ARSIQ5FYB1 569 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 C12orf43Q96C57 262 aaKnown RBP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 PEBP4Q96S96 227 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 C1orf21Q9H246 121 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 CHMP1AQ9HD42 196 aaPredicted RBP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 ZIM2Q9NZV7 527 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 LOC730098B7Z3J9 87 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 LINGO3P0C6S8 592 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 MASP1P48740 699 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 DNASE1L3Q13609 305 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 PTPRCAPQ14761 206 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 PACRGLQ8N7B6 248 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 ERMAPQ96PL5 475 aaPredicted RBP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 TAPBPLQ9BX59 468 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 ABCG4Q9H172 646 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 PI15O43692 258 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 PUM1Q14671 1186 aaKnown RBP eCLIP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 XKR5Q6UX68 686 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 SMG8Q8ND04 991 aaKnown RBP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 METTL21AQ8WXB1 218 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 ZSWIM3Q96MP5 696 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 FARSBQ9NSD9 589 aaKnown RBP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 MARK1Q9P0L2 795 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 CFAP20Q9Y6A4 193 aaKnown RBP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 REM1O75628 298 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 ILF3Q12906 894 aaKnown RBP eCLIP17.19■□□□□ 0.344e-7■■■■□ 25.5
NPHP4-209ENST00000489180 GPR68Q15743 365 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 CHERPQ8IWX8 916 aaKnown RBP17.19■□□□□ 0.34
NPHP4-209ENST00000489180 FAXDC2Q96IV6 333 aa17.19■□□□□ 0.34
NPHP4-209ENST00000489180 TRBC2A0A5B9 178 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms