RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MATN4O95460 622 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 IL7RP16871 459 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 IGFALSP35858 605 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 WASP42768 502 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 PITPNAQ00169 270 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SEMG2Q02383 582 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 FBXO43Q4G163 708 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 LYSMD3Q7Z3D4 306 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 GEMIN6Q8WXD5 167 aaKnown RBP16.07■□□□□ 0.16
COL7A1-210ENST00000487017 RELTQ969Z4 430 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 ZUFSPQ96AP4 578 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 HAVCR1Q96D42 359 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 EHD1Q9H4M9 534 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 SPATA7Q9P0W8 599 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 MALT1Q9UDY8 824 aa16.07■□□□□ 0.16
COL7A1-210ENST00000487017 TLR4O00206 839 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 KCNE1P15382 129 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 TCEA1P23193 301 aaKnown RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 ACVRL1P37023 503 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 DSTNP60981 165 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 ADGRF1Q5T601 910 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 SAMD14Q8IZD0 417 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 TNFAIP8L1Q8WVP5 186 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 KIAA1191Q96A73 305 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 C12orf43Q96C57 262 aaKnown RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 PYURFQ96I23 114 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 EFCAB11Q9BUY7 163 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 IFT27Q9BW83 186 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 ABCG4Q9H172 646 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 MARCH7Q9H992 704 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 NPPAP01160 153 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CEBPGP53567 150 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 MLLT6P55198 1093 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 ZNF678Q5SXM1 525 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CCSAPQ6IQ19 270 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 OSTM1Q86WC4 334 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 TREML1Q86YW5 311 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 OR14C36Q8NHC7 312 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 AURKBQ96GD4 344 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 TMEM74Q96NL1 305 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 OR2AG1Q9H205 316 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 OR51V1Q9H2C8 321 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 SUV39H2Q9H5I1 410 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CBSLP0DN79 551 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CSTF2P33240 577 aaKnown RBP eCLIP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CBSP35520 551 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 EMC10Q5UCC4 262 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 PLD6Q8N2A8 252 aaKnown RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 SMG7Q92540 1137 aaKnown RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CAMK1GQ96NX5 476 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 GMEB1Q9Y692 573 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 MANBAO00462 879 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CLDN4O14493 209 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 DCLK1O15075 740 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 G6PDP11413 515 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 PIK3CBP42338 1070 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 DGKGP49619 791 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 AP1S2P56377 157 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 SLBPQ14493 270 aaKnown RBP eCLIP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 CRB2Q5IJ48 1285 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 FAM110BQ8TC76 370 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 ZNF224Q9NZL3 707 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 A0A1W2PQ72 361 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 DAPL1A0PJW8 107 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 HCRTO43612 131 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 ATP6V1G1O75348 118 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 LDOC1O95751 146 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 PRKCGP05129 697 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 PSKH1P11801 424 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 NCBP2P52298 156 aaKnown RBP eCLIP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 RABL3Q5HYI8 236 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 ZCCHC10Q8TBK6 192 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 FBXL20Q96IG2 436 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 KCTD7Q96MP8 289 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 TTYH1Q9H313 450 aaPredicted RBP16.06■□□□□ 0.16
COL7A1-210ENST00000487017 TMEM9Q9P0T7 183 aa16.06■□□□□ 0.16
COL7A1-210ENST00000487017 A0A075B6Q4 140 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 LCHNA4D1U4 455 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 PTPN2P17706 415 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 DNASE1L1P49184 302 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 STC1P52823 247 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 GET4Q7L5D6 327 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-210ENST00000487017 KLHL36Q8N4N3 616 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 ZNF514Q96K75 400 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-210ENST00000487017 NEUROD4Q9HD90 331 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 FARSBQ9NSD9 589 aaKnown RBP16.05■□□□□ 0.16
COL7A1-210ENST00000487017 HTRA2O43464 458 aaPredicted RBP16.05■□□□□ 0.16
COL7A1-210ENST00000487017 CREG1O75629 220 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 RYKP34925 604 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 ZNF773Q6PK81 442 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 RPS27LQ71UM5 84 aaKnown RBP16.05■□□□□ 0.16
COL7A1-210ENST00000487017 GPR135Q8IZ08 494 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 NATD1Q8N6N6 113 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 CLCC1Q96S66 551 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 ADAM7Q9H2U9 754 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 TMLHEQ9NVH6 421 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 KCPQ6ZWJ8 1503 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 RASGRP1O95267 797 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 FPR1P21462 350 aa16.05■□□□□ 0.16
COL7A1-210ENST00000487017 CHRNA6Q15825 494 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms