RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MIPEPQ99797 713 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 WDR54Q9H977 334 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 HOMER3Q9NSC5 361 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 CUTCQ9NTM9 273 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 GALPQ9UBC7 116 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 TSR3Q9UJK0 312 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 VPS4AQ9UN37 437 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 MDC1Q14676 2089 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 LRBAP50851 2863 aa18.01■□□□□ 0.47
CCDC88B-206ENST00000473405 FITM1A5D6W6 292 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 TARM1B6A8C7 271 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 PEX12O00623 359 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 MED26O95402 600 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 ESR1P03372 595 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 OGNP20774 298 aaKnown RBP18■□□□□ 0.47
CCDC88B-206ENST00000473405 CCNFP41002 786 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 ARSFP54793 590 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 YBX1P67809 324 aaKnown RBP18■□□□□ 0.47
CCDC88B-206ENST00000473405 MYBPC3Q14896 1274 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 INPP5JQ15735 1006 aaPredicted RBP18■□□□□ 0.47
CCDC88B-206ENST00000473405 ZC3H12BQ5HYM0 836 aaKnown RBP18■□□□□ 0.47
CCDC88B-206ENST00000473405 EEF1AKMT2Q5JPI9 291 aaKnown RBP18■□□□□ 0.47
CCDC88B-206ENST00000473405 TCTE1Q5JU00 501 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 FRMPD2BQ6IN97 320 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 CENPUQ71F23 418 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 OVCH1Q7RTY7 1134 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 SDCCAG8Q86SQ7 713 aaPredicted RBP18■□□□□ 0.47
CCDC88B-206ENST00000473405 CILP2Q8IUL8 1156 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 DTWD1Q8N5C7 304 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 OR2A1Q8NGT9 310 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 PSMG3-AS1Q96PY0 264 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 TCF12Q99081 682 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 SPSB2Q99619 263 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 SELENOSQ9BQE4 189 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 SLC26A1Q9H2B4 701 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 IL1RAPL1Q9NZN1 696 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 C5AR2Q9P296 337 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 CTSFQ9UBX1 484 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 CRYL1Q9Y2S2 319 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 PPP2R2CQ9Y2T4 447 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 MRFAP1Q9Y605 127 aa18■□□□□ 0.47
CCDC88B-206ENST00000473405 ARHGEF33A8MVX0 844 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 AGPSO00116 658 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 IGHEP01854 428 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 ERGP11308 486 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 SOX8P57073 446 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 GPS1Q13098 491 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 FASTKQ14296 549 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 GRM7Q14831 915 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 NKG7Q16617 165 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 CYP2A13Q16696 494 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 YOD1Q5VVQ6 348 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 ARMC3Q5W041 872 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 ZUFSPQ96AP4 578 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 FOPNLQ96NB1 174 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 ZNF552Q9H707 407 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 SPATA7Q9P0W8 599 aa17.99■□□□□ 0.47
CCDC88B-206ENST00000473405 H3BMM5 538 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 ALBP02768 609 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 F7P08709 466 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 MMP11P24347 488 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 VSX2P58304 361 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 ACSBG2Q5FVE4 666 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 IGFL3Q6UXB1 125 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 RNF44Q7L0R7 432 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 RASGEF1CQ8N431 466 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 RAB42Q8N4Z0 105 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 METTL27Q8N6F8 245 aaPredicted RBP17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 SLC6A20Q9NP91 592 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 SLAMF7Q9NQ25 335 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 CNTRLQ7Z7A1 2325 aa17.98■□□□□ 0.47
CCDC88B-206ENST00000473405 LOC105369274A0A096LPK9 316 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 LOC102723532A0A0G2JNH3 316 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 BLACEA4D250 179 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 OR2A25A4D2G3 310 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 TCP11X1B4DZS4 312 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 MYO1CO00159 1063 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 SOCS6O14544 535 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 ALOX12BO75342 701 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 PSIP1O75475 530 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 KRT14P02533 472 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 ALPPP05187 535 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 GP1BBP13224 206 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 OR1D4P47884 311 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 CLCN7P51798 805 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 PLEKHN1Q494U1 663 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 WASHC2DQ5SRD0 308 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 ZNF470Q6ECI4 717 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 NEPROQ6NW34 567 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 CASC4Q6P4E1 433 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 SHISA6Q6ZSJ9 500 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 SPNS2Q8IVW8 549 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 OR4N4Q8N0Y3 316 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 AGGF1Q8N302 714 aaeCLIP17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 TTC29Q8NA56 475 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 GIMAP7Q8NHV1 300 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 MAGEC3Q8TD91 643 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 NACC2Q96BF6 587 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 MS4A14Q96JA4 679 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 SLC30A3Q99726 388 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms