RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 SCUBE1Q8IWY4 988 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 ULK2Q8IYT8 1036 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 DEFB107AQ8IZN7 70 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 DSELQ8IZU8 1212 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 NEIL2Q969S2 332 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 MTFMTQ96DP5 389 aaKnown RBP13.81□□□□□ -0.2
USP39-207ENST00000450066 PDXPQ96GD0 296 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 C12orf66Q96MD2 445 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 INSM2Q96T92 566 aaPredicted RBP13.81□□□□□ -0.2
USP39-207ENST00000450066 ACPTQ9BZG2 426 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 DYRK1BQ9Y463 629 aa13.81□□□□□ -0.2
USP39-207ENST00000450066 A0A088AWK7 358 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 ZNF839A8K0R7 811 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 A8MUI8 341 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 NPIPB8E9PQR5 432 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 SLC2A4P14672 509 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 PRPH2P23942 346 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 NEK2P51955 445 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 THOP1P52888 689 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 CTBSQ01459 385 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 PRKG2Q13237 762 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 ART3Q13508 389 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 LRP8Q14114 963 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 CYP2A13Q16696 494 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 UAP1L1Q3KQV9 507 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 TSPEARQ8WU66 669 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 BIRC7Q96CA5 298 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 WDR34Q96EX3 536 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 GPR174Q9BXC1 333 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 EHD1Q9H4M9 534 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 LRTM1Q9HBL6 345 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 C1orf109Q9NX04 203 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 ASIC5Q9NY37 505 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 ZIM2Q9NZV7 527 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 SPATA7Q9P0W8 599 aa13.8□□□□□ -0.2
USP39-207ENST00000450066 C19orf67A6NJJ6 358 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 BBIP1A8MTZ0 92 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 FBP2O00757 339 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 NRP2O60462 931 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 SLC22A3O75751 556 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 RSL1D1O76021 490 aaKnown RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 RABIFP47224 123 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 MMEL1Q495T6 779 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 IL23RQ5VWK5 629 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 BLOC1S3Q6QNY0 202 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 SUSD1Q6UWL2 747 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 Q6ZSR6 202 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 ZFAND4Q86XD8 727 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 PARP9Q8IXQ6 854 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 UBALD2Q8IYN6 164 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 WDR20Q8TBZ3 569 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 IL17FQ96PD4 163 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 FERD3LQ96RJ6 166 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 NPAS2Q99743 824 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 MENTQ9BUN1 341 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 RASSF4Q9H2L5 321 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 PLAGL1Q9UM63 463 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 EIF3LQ9Y262 564 aaKnown RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 PCDHGA11Q9Y5H2 935 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 PDZK1P1A8MUH7 402 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 SEC22BO75396 215 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 G6PDP11413 515 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 RPL38P63173 70 aaKnown RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 TBL3Q12788 808 aaKnown RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 CSTF3Q12996 717 aaKnown RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 TSTA3Q13630 321 aaPredicted RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 CLCA4Q14CN2 919 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 WASHC2DQ5SRD0 308 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 ATG9BQ674R7 924 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 REP15Q6BDI9 236 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 DUS1LQ6P1R4 473 aaKnown RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 PGM2L1Q6PCE3 622 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 LCTLQ6UWM7 567 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 PGAM4Q8N0Y7 254 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 CLPTM1LQ96KA5 538 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 HAUS8Q9BT25 410 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 EFCAB11Q9BUY7 163 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 DENND2DQ9H6A0 471 aaPredicted RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 MVB12BQ9H7P6 319 aa13.79□□□□□ -0.2
USP39-207ENST00000450066 IMP3Q9NV31 184 aaKnown RBP13.79□□□□□ -0.2
USP39-207ENST00000450066 IGHV1OR15-9A0A0B4J2B8 117 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 NR5A2O00482 541 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 C1GALT1C1LP0DN25 315 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 VARSP26640 1264 aaKnown RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 SRP54P61011 504 aaKnown RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 UFM1P61960 85 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 RCAN2Q14206 197 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 KIAA0040Q15053 153 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 COQ5Q5HYK3 327 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PRAMEF14Q5SWL7 426 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 C10orf62Q5T681 223 aaPredicted RBP13.78□□□□□ -0.2
USP39-207ENST00000450066 THEMIS2Q5TEJ8 643 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 PRAMEF13Q5VWM6 474 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 CYP20A1Q6UW02 462 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 WASH2PQ6VEQ5 465 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 TMPRSS11BQ86T26 416 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 GJD3Q8N144 294 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 SPEM1Q8N4L4 309 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 RAB42Q8N4Z0 105 aa13.78□□□□□ -0.2
USP39-207ENST00000450066 LMNTD1Q8N9Z9 388 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms