RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 Q0VFX4 171 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 AIMP2Q13155 320 aaKnown RBP11.07□□□□□ -0.64
USP4-204ENST00000416417 TSTA3Q13630 321 aaPredicted RBP11.07□□□□□ -0.64
USP4-204ENST00000416417 GRM7Q14831 915 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 RPS6KA1Q15418 735 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 CRB2Q5IJ48 1285 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 AARS2Q5JTZ9 985 aaKnown RBP11.07□□□□□ -0.64
USP4-204ENST00000416417 MEI1Q5TIA1 1274 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 PRAMEF13Q5VWM6 474 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 SUSD1Q6UWL2 747 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 KIRREL2Q6UWL6 708 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 NLRP9Q7RTR0 991 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 GSTA5Q7RTV2 222 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 OTOAQ7RTW8 1153 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 HPS6Q86YV9 775 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 RNF10Q8N5U6 811 aaKnown RBP11.07□□□□□ -0.64
USP4-204ENST00000416417 TTC29Q8NA56 475 aaPredicted RBP11.07□□□□□ -0.64
USP4-204ENST00000416417 GSDMBQ8TAX9 411 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 SLC22A18Q96BI1 424 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 C8orf44Q96CB5 159 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 CNDP1Q96KN2 507 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 FRMD8P1Q9BZ68 369 aaPredicted RBP11.07□□□□□ -0.64
USP4-204ENST00000416417 GNPTGQ9UJJ9 305 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 PCDHGA10Q9Y5H3 936 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 ICE1Q9Y2F5 2266 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 ANKUB1A6NFN9 424 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 AVILO75366 819 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 VPS41P49754 854 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 RBBP7Q16576 425 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 ACSBG2Q5FVE4 666 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 ZC3H12BQ5HYM0 836 aaKnown RBP11.06□□□□□ -0.64
USP4-204ENST00000416417 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.06□□□□□ -0.64
USP4-204ENST00000416417 TTC23LQ6PF05 361 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 IGFL3Q6UXB1 125 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 LINC00696Q6ZRV3 163 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 Q6ZS92 163 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 TXLNBQ8N3L3 684 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 MPP5Q8N3R9 675 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 OR2L3Q8NG85 312 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 OR2A1Q8NGT9 310 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 FKBP10Q96AY3 582 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 RAD51AP1Q96B01 352 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 THOC3Q96J01 351 aaKnown RBP11.06□□□□□ -0.64
USP4-204ENST00000416417 BIRC8Q96P09 236 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 LZTFL1Q9NQ48 299 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 ABCF3Q9NUQ8 709 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 INTS7Q9NVH2 962 aaKnown RBP11.06□□□□□ -0.64
USP4-204ENST00000416417 NOVA2Q9UNW9 492 aaKnown RBP11.06□□□□□ -0.64
USP4-204ENST00000416417 CRYL1Q9Y2S2 319 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 SEC16AO15027 2179 aa11.06□□□□□ -0.64
USP4-204ENST00000416417 SPTAN1Q13813 2472 aaKnown RBP11.06□□□□□ -0.64
USP4-204ENST00000416417 HYKKA2RU49 373 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 LDLRP01130 860 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 IGHEP01854 428 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 STATHP02808 62 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 CD63P08962 238 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 CXCR5P32302 372 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 SOX8P57073 446 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 SNRPNP63162 240 aaKnown RBP11.05□□□□□ -0.64
USP4-204ENST00000416417 SRSF11Q05519 484 aaKnown RBP11.05□□□□□ -0.64
USP4-204ENST00000416417 KLC1Q07866 573 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 CCNG2Q16589 344 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 VWA2Q5GFL6 755 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 FAAH2Q6GMR7 532 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 FBXO42Q6P3S6 717 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 LAPTM4BQ86VI4 370 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 PPFIBP2Q8ND30 876 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 CATSPER1Q8NEC5 780 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 OR11G2Q8NGC1 345 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 DNAJB14Q8TBM8 379 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 LPGAT1Q92604 370 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 ZNF285Q96NJ3 590 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 PANX3Q96QZ0 392 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 SLC30A3Q99726 388 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 WDR77Q9BQA1 342 aaPredicted RBP11.05□□□□□ -0.64
USP4-204ENST00000416417 CRB3Q9BUF7 120 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 YIPF2Q9BWQ6 316 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 WDR54Q9H977 334 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 ZNF160Q9HCG1 818 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 ZNF304Q9HCX3 659 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 CUEDC1Q9NWM3 386 aaPredicted RBP11.05□□□□□ -0.64
USP4-204ENST00000416417 BFARQ9NZS9 450 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 ESPL1Q14674 2120 aa11.05□□□□□ -0.64
USP4-204ENST00000416417 FITM1A5D6W6 292 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 VSTM2BA6NLU5 285 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 ARHGEF33A8MVX0 844 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 IPO13O94829 963 aaKnown RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 KLHL18O94889 574 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 ONECUT2O95948 504 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 F10P00742 488 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 FGGP02679 453 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 ALBP02768 609 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 PIM1P11309 404 aaPredicted RBP11.04□□□□□ -0.64
USP4-204ENST00000416417 CHRM3P20309 590 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 RPS3P23396 243 aaKnown RBP eCLIP11.04□□□□□ -0.64
USP4-204ENST00000416417 CDC25BP30305 580 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 NPY2RP49146 381 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 TUBB8Q3ZCM7 444 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 TCTE1Q5JU00 501 aa11.04□□□□□ -0.64
USP4-204ENST00000416417 ANKRD22Q5VYY1 191 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms