RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MTDHQ86UE4 582 aaKnown RBP7.14□□□□□ -1.27
SCN9A-202ENST00000409435 DHFR2Q86XF0 187 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 C10orf107Q8IVU9 208 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 PAAF1Q9BRP4 392 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 EPB41L4BQ9H329 900 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 B3GAT2Q9NPZ5 323 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 FARSBQ9NSD9 589 aaKnown RBP7.14□□□□□ -1.27
SCN9A-202ENST00000409435 PNPLA3Q9NST1 481 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 SEMA4GQ9NTN9 838 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 EPHA6Q9UF33 1036 aa7.14□□□□□ -1.27
SCN9A-202ENST00000409435 KDELR3O43731 214 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SEC22BO75396 215 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 MPSTP25325 297 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 PSMB4P28070 264 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 S100GP29377 79 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 NOS3P29474 1203 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SMSP52788 366 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 USP46P62068 366 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 REXO1L1PQ8IX06 675 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 GPR65Q8IYL9 337 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SLC5A8Q8N695 610 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF615Q8N8J6 731 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SELENOMQ8WWX9 145 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 MYDGFQ969H8 173 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SNED1Q8TER0 1413 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 TLX3O43711 291 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 CD2P06729 351 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 MGAT1P26572 445 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 GRIA4P48058 902 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 TPTEP56180 551 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 DSC2Q02487 901 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 NR6A1Q15406 480 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SLC8B1Q6J4K2 584 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 POMZP3Q6PJE2 187 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 LYSMD3Q7Z3D4 306 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ADAMTSL2Q86TH1 951 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 CCDC71Q8IV32 467 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 TP53INP2Q8IXH6 220 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 DEFB107AQ8IZN7 70 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 TMEM120AQ9BXJ8 343 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 UGT2B28Q9BY64 529 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SHCBP1LQ9BZQ2 653 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 BHLHE41Q9C0J9 482 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF304Q9HCX3 659 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 CHST7Q9NS84 486 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SEMA3GQ9NS98 782 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 A0A0A0MRY4 1105 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 PI15O43692 258 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 NARSO43776 548 aaKnown RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 LRIG2O94898 1065 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 PIGRP01833 764 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 GSTM1P09488 218 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 IFI30P13284 250 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ADRB3P13945 408 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 KDELR1P24390 212 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 CAPGP40121 348 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 NSG1P42857 185 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 AFF1P51825 1210 aaKnown RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 MGAT5Q09328 741 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 FUT2Q10981 343 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 MTAPQ13126 283 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 VPS26BQ4G0F5 336 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SH3PXD2AQ5TCZ1 1133 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 YTHDF3Q7Z739 585 aaKnown RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SPATA13Q96N96 652 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 UQCC2Q9BRT2 126 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 NTPCRQ9BSD7 190 aaKnown RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 RACGAP1Q9H0H5 632 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 HHATLQ9HCP6 504 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 POLHQ9Y253 713 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 DGKBQ9Y6T7 804 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 NPIPA7E9PJI5 369 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 CAPN5O15484 640 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 RGS14O43566 566 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 AKAP8O43823 692 aaKnown RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SSX4O60224 188 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ULK1O75385 1050 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 RECQL5O94762 991 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF682O95780 498 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ALDOAP04075 364 aaKnown RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 NPIPA8P0DM63 369 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 RARAP10276 462 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 GPAT3Q53EU6 434 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 STPG1Q5TH74 334 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 GALNT18Q6P9A2 607 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 CYP4V2Q6ZWL3 525 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 RASGEF1AQ8N9B8 481 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 MAGEE2Q8TD90 523 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 DCAKDQ8WVC6 231 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ASB16Q96NS5 453 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ERGIC2Q96RQ1 377 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 TMBIM4Q9HC24 238 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 TIGARQ9NQ88 270 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 SAR1AQ9NR31 198 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 DNMT3AQ9Y6K1 912 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 BRINP1O60477 761 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 STC2O76061 302 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF14P17017 642 aaPredicted RBP7.13□□□□□ -1.27
SCN9A-202ENST00000409435 ENGP17813 658 aa7.13□□□□□ -1.27
SCN9A-202ENST00000409435 KLK7P49862 253 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms