RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NFE2L1Q14494 772 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 DCAF12L1Q5VU92 463 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 KIAA1614Q5VZ46 1190 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 CHRDL2Q6WN34 429 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 AQP11Q8NBQ7 271 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 DEDD2Q8WXF8 326 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 NCSTNQ92542 709 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 FZD4Q9ULV1 537 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SH2B3Q9UQQ2 575 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SLC27A5Q9Y2P5 690 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 GOLGA4Q13439 2230 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 USP41Q3LFD5 358 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 WDR45BQ5MNZ6 344 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF675Q8TD23 568 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 C7orf50Q9BRJ6 194 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TPT1P8Q9HAU6 139 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TTC34A8MYJ7 566 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 IL1BP01584 269 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 ELFN1P0C7U0 828 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 PLEKHG7Q6ZR37 379 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 DEFB128Q7Z7B8 93 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 AGBL3Q8NEM8 1001 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 OR6C4Q8NGE1 309 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 GPR152Q8TDT2 470 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 CASTOR1Q8WTX7 329 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 S100A16Q96FQ6 103 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 HSD17B14Q9BPX1 270 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SOX17Q9H6I2 414 aaPredicted RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 CALML5Q9NZT1 146 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 MRTO4Q9UKD2 239 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SLC27A6Q9Y2P4 619 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 PCDHGB6Q9Y5F9 930 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 A0A1B0GVG6 124 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TBC1D3BA6NDS4 549 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 KAT7O95251 611 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TACSTD2P09758 323 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 DDX6P26196 483 aaKnown RBP eCLIP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 GRK6P43250 576 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 PTPN9P43378 593 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 HADHBP55084 474 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TMEM126BQ8IUX1 230 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 EXTL2Q9UBQ6 330 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 KCNN3Q9UGI6 736 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 FBXW2Q9UKT8 454 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 RNF17Q9BXT8 1623 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 A0A1W2PQ67 120 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 B4GALT5O43286 388 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TLX2O43763 284 aaPredicted RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 ATG13O75143 517 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 RPP14O95059 124 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF3P17036 446 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 UQCRC1P31930 480 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SMSP52788 366 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 LCLAT1Q6UWP7 414 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SLC15A4Q8N697 577 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 OR9I1Q8NGQ6 314 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 OR8S1Q8NH09 359 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 SMURF1Q9HCE7 757 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 TRIM36Q9NQ86 728 aa11.59□□□□□ -0.55
SYNPO-202ENST00000394243 RUVBL1Q9Y265 456 aaKnown RBP11.59□□□□□ -0.55
SYNPO-202ENST00000394243 ZNF878C9JN71 531 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 F5H0A9 414 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 SNAP29O95721 258 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 C4BPAP04003 597 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 F7P08709 466 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 HDCP19113 662 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 PRKCHP24723 683 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ARL3P36405 182 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 TUSC3Q13454 348 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 GALNT11Q8NCW6 608 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ASB15Q8WXK1 588 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ARHGEF4Q9NR80 690 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 MS4A12Q9NXJ0 267 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ERVK-19Q9WJR5 959 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 JCADQ9P266 1359 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 TLR5O60602 858 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CH25HO95992 272 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 HUNKP57058 714 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 RELAQ04206 551 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 SLC13A2Q13183 592 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 COL9A3Q14050 684 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 UGCGQ16739 394 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 LRRC70Q7Z2Q7 622 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 COMTD1Q86VU5 262 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CPNE8Q86YQ8 564 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 Q8N402 240 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CNIH3Q8TBE1 160 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 PEX13Q92968 403 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 PTPN18Q99952 460 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 OXCT2Q9BYC2 517 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ARL6Q9H0F7 186 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 FAM83DQ9H4H8 585 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 DNAJC27Q9NZQ0 273 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 TSPOAP1O95153 1857 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CST3P01034 146 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CHMP24386 653 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 LRRC66Q68CR7 880 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF772Q68DY9 489 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 GEMIN6Q8WXD5 167 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ITPKCQ96DU7 683 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms