RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 GAL3ST1Q99999 423 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF350Q9GZX5 532 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 WDR26Q9H7D7 661 aa12.52□□□□□ -0.4
CCDC88C-204ENST00000389857 A8MUI8 341 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 WNT9AO14904 365 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 IRAK2O43187 625 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 PRPS1L1P21108 318 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 CSTF2P33240 577 aaKnown RBP eCLIP12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 DSTNP60981 165 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 MPP2Q14168 576 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC9A4Q6AI14 798 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 YIPF7Q8N8F6 280 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 DCBLD1Q8N8Z6 715 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 POF1BQ8WVV4 589 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 NDC1Q9BTX1 674 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 LRRC3Q9BY71 257 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 PCDHB16Q9NRJ7 776 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 MKLN1Q9UL63 735 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 ARL5AQ9Y689 179 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 PGLSO95336 258 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 HK1P19367 917 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 CAPZA1P52907 286 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 ERVK-8P63133 956 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 OR10G2Q8NGC3 310 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 MFSD3Q96ES6 412 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 TLR6Q9Y2C9 796 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 POFUT2Q9Y2G5 429 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 LGR5O75473 907 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 RAB36O95755 333 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 CYP11A1P05108 521 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 STOMP27105 288 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 ARL2P36404 184 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 TUBA4AP68366 448 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 OC90Q02509 493 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 ADAM15Q13444 863 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 ZNF101Q8IZC7 436 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 TNFRSF25Q93038 417 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 LDAHQ9H6V9 325 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 ITM2CQ9NQX7 267 aa12.52□□□□□ -0.41
CCDC88C-204ENST00000389857 SAP18O00422 153 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 CSN2P05814 226 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 CBSLP0DN79 551 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 CSNK2A2P19784 350 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 PRKCHP24723 683 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 CBSP35520 551 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 SMSP52788 366 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 OGFOD2Q6N063 350 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 SSX6Q7RTT6 188 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 THAP6Q8TBB0 222 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 TCEAL3Q969E4 200 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 TMEM168Q9H0V1 697 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 RBMX2Q9Y388 322 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 A0A1W2PQ45 241 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 A0A1W2PQY0 241 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ITGB1P05556 798 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ELNP15502 786 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ATF4P18848 351 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 BNIP1Q12981 228 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 LIN52Q52LA3 116 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 C7orf61Q8IZ16 206 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 PLEKHA6Q9Y2H5 1048 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 PPLO60437 1756 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 CLEC3AO75596 197 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 RCBTB2O95199 551 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 OR2B6P58173 313 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 MTPNP58546 118 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 FBXO48Q5FWF7 155 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 PPP2R2DQ66LE6 453 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 VGLL2Q8N8G2 317 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 KCT2Q8NC54 265 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 OR2L2Q8NH16 312 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ZSCAN5AQ9BUG6 496 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ASPNQ9BXN1 380 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 FLRT1Q9NZU1 646 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 TBX1O43435 398 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 GDPD4Q6W3E5 623 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 HSDL2Q6YN16 418 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC51AQ86UW1 340 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 TSTD1Q8NFU3 115 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 CMTM7Q96FZ5 175 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 IGSF9Q9P2J2 1179 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 NDUFS4O43181 175 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 SLC10A7Q0GE19 358 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 RBM20Q5T481 1227 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 PDE12Q6L8Q7 609 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 GPR153Q6NV75 609 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ENPP7Q6UWV6 458 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 KIF1AQ12756 1690 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 TLR4O00206 839 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 FMO3P31513 532 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ZNF460Q14592 562 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 GPR33Q49SQ1 333 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 SCGB2B2Q4G0G5 96 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 FBXO43Q4G163 708 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 KIAA1161Q6NSJ0 714 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 PAQR7Q86WK9 346 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 SIPA1Q96FS4 1042 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 MTERF1Q99551 399 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 UCK2Q9BZX2 261 aa12.51□□□□□ -0.41
CCDC88C-204ENST00000389857 ZDHHC3Q9NYG2 299 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms