RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NPEPPSL1A6NEC2 478 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CDC7O00311 574 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 GPR39O43194 453 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 TNFSF14O43557 240 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SGTAO43765 313 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 MTX2O75431 263 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 TSPAN12O95859 305 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 GP1BAP07359 652 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 GIMD1P0DJR0 217 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CKMT1AP12532 417 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CKMT2P17540 419 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 MTTPP55157 894 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CDH13P55290 713 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 AP2B1P63010 937 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SH3BP2P78314 561 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SQLEQ14534 574 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 TAF11Q15544 211 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 UAP1L1Q3KQV9 507 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 ABRAXAS1Q6UWZ7 409 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 LRRC74BQ6ZQY2 392 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 C17orf82Q86X59 251 aaPredicted RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 NRROSQ86YC3 692 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 RBM12BQ8IXT5 1001 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 CLYBLQ8N0X4 340 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 FBXO39Q8N4B4 442 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 GIMAP7Q8NHV1 300 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 BAHD1Q8TBE0 780 aaPredicted RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 HM13Q8TCT9 377 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CD200R1Q8TD46 325 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 SETD7Q8WTS6 366 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 NRG4Q8WWG1 115 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 NAT6Q93015 286 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 CCDC124Q96CT7 223 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 RCN3Q96D15 328 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 C19orf60Q96EN9 201 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 ZNF570Q96NI8 536 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 TCEAL2Q9H3H9 227 aaPredicted RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 MID1IP1Q9NPA3 183 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 UCKL1Q9NWZ5 548 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 NDE1Q9NXR1 346 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 TAAR2Q9P1P5 351 aa9.92□□□□□ -0.82
VPS53-202ENST00000389040 PRPF19Q9UMS4 504 aaKnown RBP9.92□□□□□ -0.82
VPS53-202ENST00000389040 PIEZO1Q92508 2521 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 RIF1Q5UIP0 2472 aaKnown RBP9.91□□□□□ -0.82
VPS53-202ENST00000389040 LAMA1P25391 3075 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 ZNF292O60281 2723 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 LRRC14BA6NHZ5 514 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 OR2AG2A6NM03 316 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 E5RI56 91 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 BTN3A1O00481 513 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 UBDO15205 165 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 NUDT21O43809 227 aaKnown RBP9.91□□□□□ -0.82
VPS53-202ENST00000389040 SDC3O75056 442 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 FKBP6O75344 327 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 SORBS2O94875 1100 aaKnown RBP9.91□□□□□ -0.82
VPS53-202ENST00000389040 LDOC1O95751 146 aaPredicted RBP9.91□□□□□ -0.82
VPS53-202ENST00000389040 FGF4P08620 206 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 F3P13726 295 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 CHRM3P20309 590 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 EEF1DP29692 281 aaKnown RBP9.91□□□□□ -0.82
VPS53-202ENST00000389040 ACTR1BP42025 376 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 HALP42357 657 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 MAPK9P45984 424 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 CTSCP53634 463 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 IL2P60568 153 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 ACTR1AP61163 376 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 LCP2Q13094 533 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 PUM1Q14671 1186 aaKnown RBP eCLIP9.91□□□□□ -0.82
VPS53-202ENST00000389040 PPP1R3AQ16821 1122 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 PROX2Q3B8N5 592 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 UGT3A2Q3SY77 523 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 PTRHD1Q6GMV3 140 aaKnown RBP9.91□□□□□ -0.82
VPS53-202ENST00000389040 CYHR1Q6ZMK1 362 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 GATAD2AQ86YP4 633 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 HPS6Q86YV9 775 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 DSELQ8IZU8 1212 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 GPR156Q8NFN8 814 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 OR2I1PQ8NGU4 316 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 WDR48Q8TAF3 677 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 ASZ1Q8WWH4 475 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 JADE3Q92613 823 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 SH3KBP1Q96B97 665 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 LINGO1Q96FE5 620 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 EFCAB1Q9HAE3 211 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 FTSJ1Q9UET6 329 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 POMPQ9Y244 141 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 PCDHGA1Q9Y5H4 931 aa9.91□□□□□ -0.82
VPS53-202ENST00000389040 STX16-NPEPL1H3BU86 382 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 EIF3FO00303 357 aaPredicted RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 STX16O14662 325 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 AZIN1O14977 448 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 NVLO15381 856 aaKnown RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 SH3BP5O60239 455 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 KLK8O60259 260 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 GPC4O75487 556 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 ACP5P13686 325 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 ANPEPP15144 967 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 GLB1P16278 677 aa9.9□□□□□ -0.82
VPS53-202ENST00000389040 XRCC1P18887 633 aaPredicted RBP9.9□□□□□ -0.82
VPS53-202ENST00000389040 ACP1P24666 158 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms