RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TLK1Q9UKI8 766 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 SNX7Q9UNH6 387 aa17.65■□□□□ 0.42
CLN3-202ENST00000355477 HEMK1Q9Y5R4 338 aaPredicted RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 UBR5O95071 2799 aaPredicted RBP17.65■□□□□ 0.42
CLN3-202ENST00000355477 TARM1B6A8C7 271 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 J3QKU1 62 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 MYO1CO00159 1063 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 DNAJB5O75953 348 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 TTC4O95801 387 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 AGXTP21549 392 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 ELK3P41970 407 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 ITGA8P53708 1063 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 TTLL9Q3SXZ7 439 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 CPZQ66K79 652 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 SUSD1Q6UWL2 747 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 APLFQ8IW19 511 aaPredicted RBP17.64■□□□□ 0.41
CLN3-202ENST00000355477 C17orf53Q8N3J3 647 aaPredicted RBP17.64■□□□□ 0.41
CLN3-202ENST00000355477 ASB11Q8WXH4 323 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 THAP4Q8WY91 577 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 RUNDC3BQ96NL0 473 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 NDNQ99608 321 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 SLC17A6Q9P2U8 582 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 KLK4Q9Y5K2 254 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 COMMD10Q9Y6G5 202 aa17.64■□□□□ 0.41
CLN3-202ENST00000355477 CCDC188H7C350 402 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 KLF7O75840 302 aaPredicted RBP17.63■□□□□ 0.41
CLN3-202ENST00000355477 FKBP9O95302 570 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 AHSGP02765 367 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 CATP04040 527 aaKnown RBP17.63■□□□□ 0.41
CLN3-202ENST00000355477 MPC1LP0DKB6 136 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 NR1D1P20393 614 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 MCM3P25205 808 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 PAFAH1B1P43034 410 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 CARSP49589 748 aaKnown RBP17.63■□□□□ 0.41
CLN3-202ENST00000355477 MRPS25P82663 173 aaKnown RBP17.63■□□□□ 0.41
CLN3-202ENST00000355477 CHAF1BQ13112 559 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 ZC3H12BQ5HYM0 836 aaKnown RBP17.63■□□□□ 0.41
CLN3-202ENST00000355477 MLIPQ5VWP3 458 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 TMEM151BQ8IW70 566 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 CPNE9Q8IYJ1 553 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 KRT12Q99456 494 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 NAT9Q9BTE0 207 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 NDC1Q9BTX1 674 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 ACAT2Q9BWD1 397 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 TRIM31Q9BZY9 425 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 FAM114A2Q9NRY5 505 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 SRPK3Q9UPE1 567 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 TP53TG5Q9Y2B4 290 aa17.63■□□□□ 0.41
CLN3-202ENST00000355477 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.63■□□□□ 0.41
CLN3-202ENST00000355477 SPENQ96T58 3664 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 SETXQ7Z333 2677 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 C9J4A7 227 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 GFYI3L273 518 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 CNOT3O75175 753 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 RFPL1O75677 317 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 SEC31AO94979 1220 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 SLC16A8O95907 504 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 ITGAXP20702 1163 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 ALAS2P22557 587 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 PNLIPRP1P54315 467 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 FOXL2P58012 376 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 DCDP81605 110 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 SLC9A5Q14940 896 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 NKAIN1Q4KMZ8 207 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 RBM20Q5T481 1227 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 FRMPD2BQ6IN97 320 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 TRMT10BQ6PF06 316 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 PIWIL4Q7Z3Z4 852 aaKnown RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 CNTN4Q8IWV2 1026 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 PDIK1LQ8N165 341 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 FBXO15Q8NCQ5 510 aaPredicted RBP17.62■□□□□ 0.41
CLN3-202ENST00000355477 PPFIBP2Q8ND30 876 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 PROKR1Q8TCW9 393 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 ZNF480Q8WV37 535 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 CERS2Q96G23 380 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 CFAP36Q96G28 342 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 ZNF285Q96NJ3 590 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 TRIM4Q9C037 500 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 SLC6A20Q9NP91 592 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 SLC22A11Q9NSA0 550 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 TXLNGQ9NUQ3 528 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 RNF14Q9UBS8 474 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 CHMP2BQ9UQN3 213 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 TEX264Q9Y6I9 313 aa17.62■□□□□ 0.41
CLN3-202ENST00000355477 FLNBO75369 2602 aaKnown RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 NUP210LQ5VU65 1888 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 LOC105369274A0A096LPK9 316 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 LOC102723532A0A0G2JNH3 316 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 ARGFXA6NJG6 315 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 MKRN2OSH3BPM6 223 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 VPS26AO75436 327 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 ENO3P13929 434 aaPredicted RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 RPL21P46778 160 aaKnown RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 CDKN2DP55273 166 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 VSX2P58304 361 aaPredicted RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 TSTA3Q13630 321 aaPredicted RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 ARHGAP19Q14CB8 494 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 LACTB2Q53H82 288 aaPredicted RBP17.61■□□□□ 0.41
CLN3-202ENST00000355477 TEDDM1Q5T9Z0 273 aa17.61■□□□□ 0.41
CLN3-202ENST00000355477 FBXO42Q6P3S6 717 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms