RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 PROSER1Q86XN7 944 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 KDF1Q8NAX2 398 aaPredicted RBP15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 OR2L3Q8NG85 312 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 OR2A1Q8NGT9 310 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 ALKBH8Q96BT7 664 aaKnown RBP15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 RNF31Q96EP0 1072 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 MED8Q96G25 268 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 TCTN2Q96GX1 697 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 UBXN10Q96LJ8 280 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 TEFMQ96QE5 360 aaKnown RBP15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 CCDC77Q9BR77 488 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 PARD6BQ9BYG5 372 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 B3GNT4Q9C0J1 378 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 ATG10Q9H0Y0 220 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 FANCEQ9HB96 536 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 CCDC177Q9NQR7 707 aaPredicted RBP15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 INTS7Q9NVH2 962 aaKnown RBP15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 TLK1Q9UKI8 766 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 RARRES3Q9UL19 164 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 RAXQ9Y2V3 346 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 ACOT9Q9Y305 439 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 OARD1Q9Y530 152 aa15.31■□□□□ 0.04
CCDC28A-201ENST00000332797 A0A087X1B8 175 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 TRIM49D1C9J1S8 452 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 FKBP9O95302 570 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 C2P06681 752 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 CNTFP26441 200 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 CMPK1P30085 196 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 IRF9Q00978 393 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 IL11RAQ14626 422 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 DEFB110Q30KQ9 67 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 ZFAND4Q86XD8 727 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 PPP1R3BQ86XI6 285 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 LRRC56Q8IYG6 542 aaPredicted RBP15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 SNIP1Q8TAD8 396 aaKnown RBP15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 AENQ8WTP8 325 aaKnown RBP15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 NAF1Q96HR8 494 aaKnown RBP15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 DCBLD2Q96PD2 775 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 EGFL8Q99944 293 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 ZPBPQ9BS86 351 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 DHRS4Q9BTZ2 278 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 FAM60AQ9NP50 221 aa15.3■□□□□ 0.04
CCDC28A-201ENST00000332797 ACACBO00763 2458 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 A0A096LPK6 155 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 TMEM150CB9EJG8 249 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 TAF4O00268 1085 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 KRT37O76014 449 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 CCNDBP1O95273 360 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 SHBGP04278 402 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 SNRPAP09012 282 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 LTA4HP09960 611 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 FGF5P12034 268 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 GRIA3P42263 894 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 CSRP3P50461 194 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 YBX1P67809 324 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 DLG1Q12959 904 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 NAE1Q13564 534 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 NAA30Q147X3 362 aaPredicted RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 OR4D1Q15615 310 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 PRAMEF13Q5VWM6 474 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 ICE2Q659A1 982 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 FCRL6Q6DN72 434 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 EMBQ6PCB8 327 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 FIGLAQ6QHK4 219 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 CCDC91Q7Z6B0 441 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 KCTD4Q8WVF5 259 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 ATL1Q8WXF7 558 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 N4BP2L2Q92802 583 aaPredicted RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 PTERQ96BW5 349 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 FBXL8Q96CD0 374 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 ZNF501Q96CX3 271 aaPredicted RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 VPS11Q9H270 941 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 NMRAL1Q9HBL8 299 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 SLC6A20Q9NP91 592 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 MRPS30Q9NP92 439 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 IGSF5Q9NSI5 407 aa15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 PSMC3IPQ9P2W1 217 aaPredicted RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 SNRNP200O75643 2136 aaKnown RBP15.29■□□□□ 0.04
CCDC28A-201ENST00000332797 NCF1BA6NI72 391 aaPredicted RBP15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 NCF1CA8MVU1 366 aaPredicted RBP15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 ANXA5P08758 320 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 NCF1P14598 390 aaPredicted RBP15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 TFEBP19484 476 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 CD82P27701 267 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 HSD17B3P37058 310 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 SLC26A3P40879 764 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 LGSNQ5TDP6 509 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 ADGRD1Q6QNK2 874 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 GPSM1Q86YR5 675 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 CENPLQ8N0S6 344 aaPredicted RBP15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 ZNF248Q8NDW4 579 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 KCNE4Q8WWG9 221 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 EXT2Q93063 718 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 ISL2Q96A47 359 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 PYCR2Q96C36 320 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 NXNL1Q96CM4 212 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 DPH7Q9BTV6 452 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 ULBP3Q9BZM4 244 aa15.28■□□□□ 0.04
CCDC28A-201ENST00000332797 ALG9Q9H6U8 611 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms