RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ADRA1AP35348 466 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CXCL12P48061 93 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 KIR2DS3Q14952 304 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CCDC85BQ15834 202 aaPredicted RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 NLRP8Q86W28 1048 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 FAM46DQ8NEK8 389 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 C1orf50Q9BV19 199 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 TREX1Q9NSU2 369 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 ARMCX1Q9P291 453 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 SPIN1Q9Y657 262 aaPredicted RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 NFS1Q9Y697 457 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 A0A087WXM4 84 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 MT-CO1P00395 513 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 BPIP17213 487 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 NT5EP21589 574 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CD6P30203 668 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 IGFALSP35858 605 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 VIPR2P41587 438 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 TRA2BP62995 288 aaKnown RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 DUOXA1Q1HG43 343 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 TIGD2Q4W5G0 525 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 ADCK1Q86TW2 530 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 ZNF781Q8N8C0 355 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 EEF1AKMT1Q8WVE0 214 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 LRRC3Q9BY71 257 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 B4DGG1 531 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 AXIN1O15169 862 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CBX6O95503 412 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 BMP7P18075 431 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 GBX1Q14549 363 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 ANO7Q6IWH7 933 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 ZFAND4Q86XD8 727 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 TTC9BQ8N6N2 239 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 SLITRK2Q9H156 845 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CAPN10Q9HC96 672 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CHRM1P11229 460 aaPredicted RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 HLA-EP13747 358 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 HMGA1P17096 107 aaKnown RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 CD68P34810 354 aaPredicted RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 GJA4P35212 333 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 ZNF630Q2M218 657 aaPredicted RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 MSS51Q4VC12 460 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CHMP1BQ7LBR1 199 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 TMEM126BQ8IUX1 230 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 CYP4X1Q8N118 509 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 SPATA6LQ8N4H0 392 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 GSTCDQ8NEC7 633 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 TEX47Q8TBZ9 253 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 LPGAT1Q92604 370 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 NAT6Q93015 286 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 OTULINQ96BN8 352 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 RBM4BQ9BQ04 359 aaKnown RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 RBM4Q9BWF3 364 aaKnown RBP13.29□□□□□ -0.28
LDLR-201ENST00000252444 TBC1D10AQ9BXI6 508 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 P2RX2Q9UBL9 471 aa13.29□□□□□ -0.28
LDLR-201ENST00000252444 TRPM7Q96QT4 1865 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 TYROBPO43914 113 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 IFNW1P05000 195 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 ETV3P41162 512 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 GRIA1P42261 906 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 STK19P49842 368 aaPredicted RBP13.28□□□□□ -0.28
LDLR-201ENST00000252444 VASPP50552 380 aaPredicted RBP13.28□□□□□ -0.28
LDLR-201ENST00000252444 KIAA1024LP59773 190 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 CREB5Q02930 508 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 CCDC157Q569K6 752 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 DPY19L2P1Q6NXN4 242 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 PDZD3Q86UT5 571 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 PACRGLQ8N7B6 248 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 DDHD1Q8NEL9 900 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 C10orf82Q8WW14 230 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 DGAT2Q96PD7 388 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 LMAN1LQ9HAT1 526 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 MYRFQ9Y2G1 1151 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 CXorf49A8MYA2 514 aaPredicted RBP13.28□□□□□ -0.28
LDLR-201ENST00000252444 CLOCKO15516 846 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 FABP3P05413 133 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 NOS3P29474 1203 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 KLHL26Q53HC5 615 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 CHRDL2Q6WN34 429 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 POU5F2Q8N7G0 328 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 LINC01599Q8WXQ3 324 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 SLITRK5O94991 958 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 NUDT14O95848 222 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 LAMP2P13473 410 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 PTGES3Q15185 160 aaKnown RBP13.28□□□□□ -0.28
LDLR-201ENST00000252444 NRROSQ86YC3 692 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 DPP10Q8N608 796 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 ZHX1-C8orf76Q96EF9 292 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 NUAK1O60285 661 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 ATXN8OSP0DMR3 200 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 AOC1P19801 751 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 IL4RP24394 825 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 RFX3P48380 749 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 RAB28P51157 221 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 DEFA1P59665 94 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 DEFA3P59666 94 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 ELF3P78545 371 aaPredicted RBP13.28□□□□□ -0.28
LDLR-201ENST00000252444 BNC1Q01954 994 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 RBBP4Q09028 425 aa13.28□□□□□ -0.28
LDLR-201ENST00000252444 ZNF763Q0D2J5 394 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms