RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 DARSP14868 501 aaKnown RBP3.33□□□□□ -1.88
CD44-239ENST00000639002 LHCGRP22888 699 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 PSMB10P40306 273 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 PEX6Q13608 980 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 ODF4Q2M2E3 257 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 SYT14P1Q58G82 188 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 RNASEH2BQ5TBB1 312 aaKnown RBP3.33□□□□□ -1.88
CD44-239ENST00000639002 LYSMD4Q5XG99 296 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 KRT79Q5XKE5 535 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 DHRS7BQ6IAN0 325 aaPredicted RBP3.33□□□□□ -1.88
CD44-239ENST00000639002 UGT3A1Q6NUS8 523 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 NUDT13Q86X67 352 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 HPS6Q86YV9 775 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 AFAP1Q8N556 730 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 POM121L12Q8N7R1 296 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 NUP37Q8NFH4 326 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 GPRC5AQ8NFJ5 357 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 MAPK15Q8TD08 544 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 PTPMT1Q8WUK0 201 aaPredicted RBP3.33□□□□□ -1.88
CD44-239ENST00000639002 CCDC107Q8WV48 283 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 HDAC2Q92769 488 aaKnown RBP3.33□□□□□ -1.88
CD44-239ENST00000639002 CCDC34Q96HJ3 373 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 STUB1Q9UNE7 303 aa3.33□□□□□ -1.88
CD44-239ENST00000639002 MYH14Q7Z406 1995 aaKnown RBP3.32□□□□□ -1.88
CD44-239ENST00000639002 SLC2A2P11168 524 aaPredicted RBP3.32□□□□□ -1.88
CD44-239ENST00000639002 ITIH1P19827 911 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 TNFAIP3P21580 790 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 MNDAP41218 407 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 GUCY2DQ02846 1103 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 UGT3A2Q3SY77 523 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 KIF6Q6ZMV9 814 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 TBC1D1Q86TI0 1168 aaPredicted RBP3.32□□□□□ -1.88
CD44-239ENST00000639002 KBTBD6Q86V97 674 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 SLC39A11Q8N1S5 342 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 OR13C3Q8NGS6 347 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 OR6S1Q8NH40 331 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 ARSGQ96EG1 525 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 FAM20AQ96MK3 541 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 FAM218AQ96MZ4 157 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 AGAP4Q96P64 663 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 KIFC3Q9BVG8 833 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 FAM207AQ9NSI2 230 aaPredicted RBP3.32□□□□□ -1.88
CD44-239ENST00000639002 MAN1B1Q9UKM7 699 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 RARRES3Q9UL19 164 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 CSNK1G3Q9Y6M4 447 aa3.32□□□□□ -1.88
CD44-239ENST00000639002 LOC102723996A0A087X1L8 192 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 B4DLN1 442 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 CTDSP2O14595 271 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 DOK2O60496 412 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 TRUB2O95900 331 aaKnown RBP3.31□□□□□ -1.88
CD44-239ENST00000639002 BCL10O95999 233 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 SLC9A3P48764 834 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 MRPL12P52815 198 aaKnown RBP3.31□□□□□ -1.88
CD44-239ENST00000639002 EXT1Q16394 746 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 ZNF74Q16587 644 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 DUSP28Q4G0W2 176 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 FAAH2Q6GMR7 532 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 CCDC70Q6NSX1 233 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 FAM180BQ6P0A1 224 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 ZNF595Q8IYB9 648 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 SSMEM1Q8WWF3 244 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 GAL3ST4Q96RP7 486 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 MMP27Q9H306 513 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 MED20Q9H944 212 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 PPANQ9NQ55 473 aaKnown RBP3.31□□□□□ -1.88
CD44-239ENST00000639002 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.31□□□□□ -1.88
CD44-239ENST00000639002 TEX10Q9NXF1 929 aaPredicted RBP3.31□□□□□ -1.88
CD44-239ENST00000639002 GPR83Q9NYM4 423 aa3.31□□□□□ -1.88
CD44-239ENST00000639002 PRRC2AP48634 2157 aaKnown RBP3.31□□□□□ -1.88
CD44-239ENST00000639002 IGLV3-10A0A075B6K4 115 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 A0A1W2PQ09 198 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 EPHB6O15197 1021 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 IGHEP01854 428 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 BCL3P20749 454 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 HLA-FP30511 346 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 XGP55808 180 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 ARF3P61204 181 aaPredicted RBP3.3□□□□□ -1.88
CD44-239ENST00000639002 HNRNPKP61978 463 aaKnown RBP eCLIP3.3□□□□□ -1.88
CD44-239ENST00000639002 ARF1P84077 181 aaKnown RBP3.3□□□□□ -1.88
CD44-239ENST00000639002 EFTUD2Q15029 972 aaKnown RBP eCLIP3.3□□□□□ -1.88
CD44-239ENST00000639002 MTHFSDQ2M296 383 aaKnown RBP3.3□□□□□ -1.88
CD44-239ENST00000639002 IGSF11Q5DX21 431 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 SLC35D3Q5M8T2 416 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 LCN1P1Q5VSP4 162 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 FRRS1Q6ZNA5 592 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 G2E3Q7L622 706 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 SLC47A2Q86VL8 602 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 TMEM173Q86WV6 379 aaPredicted RBP3.3□□□□□ -1.88
CD44-239ENST00000639002 ZNF584Q8IVC4 421 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 ABHD12Q8N2K0 398 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 C1orf131Q8NDD1 294 aaKnown RBP3.3□□□□□ -1.88
CD44-239ENST00000639002 ATP8B4Q8TF62 1192 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 LRRC15Q8TF66 581 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 PIGBQ92521 554 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 PDLIM5Q96HC4 596 aaKnown RBP3.3□□□□□ -1.88
CD44-239ENST00000639002 MPP4Q96JB8 637 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 ZNF577Q9BSK1 485 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 MIS12Q9H081 205 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 GKN1Q9NS71 199 aa3.3□□□□□ -1.88
CD44-239ENST00000639002 NDE1Q9NXR1 346 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms