RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 UAP1L1Q3KQV9 507 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 UGT3A2Q3SY77 523 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 CCDC149Q6ZUS6 474 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 C11orf96Q7Z7L8 435 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 RBM23Q86U06 439 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 DENND1CQ8IV53 801 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 ELMOD2Q8IZ81 293 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SLC22A15Q8IZD6 547 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 PIK3R3Q92569 461 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 FUBP1Q96AE4 644 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 IMP4Q96G21 291 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 HSH2DQ96JZ2 352 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 TNKS2Q9H2K2 1166 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 POLR3BQ9NW08 1133 aaPredicted RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 UCKL1Q9NWZ5 548 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 ABCD2Q9UBJ2 740 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SARDHQ9UL12 918 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 ISPDA4D126 451 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 BTN3A3O00478 584 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 GPR39O43194 453 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 CCNYL3P0C7X3 344 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 TYMPP19971 482 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 FPR1P21462 350 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 FDXRP22570 491 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 OR1E2P47887 323 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 SLC16A1P53985 500 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 GP2P55259 537 aaKnown RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 GABARAPL2P60520 117 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 DSC3Q14574 896 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 SYTL3Q4VX76 610 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 SOWAHCQ53LP3 525 aaPredicted RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 BEND5Q7L4P6 421 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 LUZP2Q86TE4 346 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 CNTN4Q8IWV2 1026 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ARHGAP12Q8IWW6 846 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 STK40Q8N2I9 435 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 IPCEF1Q8WWN9 437 aaPredicted RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 NACC2Q96BF6 587 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 MTERF1Q99551 399 aaKnown RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 TTPALQ9BTX7 342 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 FARSBQ9NSD9 589 aaKnown RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 GPR83Q9NYM4 423 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 NUDT4Q9NZJ9 180 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 COMMD3Q9UBI1 195 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ACTL7AQ9Y615 435 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 CTDSP2O14595 271 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 OR10H3O60404 316 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 FAM163BP0C2L3 166 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 PSKH1P11801 424 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 SMPD1P17405 629 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 PBLDP30039 288 aaPredicted RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 GNG2P59768 71 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 TAF10Q12962 218 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 CATSPEREQ5SY80 951 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 PAQR9Q6ZVX9 377 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ZNF675Q8TD23 568 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ADAM2Q99965 735 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ZNF222Q9UK12 451 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 PCTPQ9UKL6 214 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 CFL2Q9Y281 166 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 HSPB11Q9Y547 144 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 PCDHGB6Q9Y5F9 930 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 NOX1Q9Y5S8 564 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 FAM220BPB1ANY3 271 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 TLL1O43897 1013 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ERN1O75460 977 aaKnown RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 CKMT1AP12532 417 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 TNNI3P19429 210 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ALDH9A1P49189 494 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 HNRNPFP52597 415 aaKnown RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 CAMK2GQ13555 558 aaPredicted RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 ZSWIM7Q19AV6 140 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ARMC12Q5T9G4 340 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 B3GNT8Q7Z7M8 397 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 ZNF598Q86UK7 904 aaKnown RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 ZMIZ2Q8NF64 920 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 LILRB4Q8NHJ6 448 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 RHEBL1Q8TAI7 183 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 COPS8Q99627 209 aa10.78□□□□□ -0.68
CLN3-244ENST00000636147 MRM3Q9HC36 420 aaKnown RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 ZNF624Q9P2J8 865 aaPredicted RBP10.78□□□□□ -0.68
CLN3-244ENST00000636147 CDK5RAP2Q96SN8 1893 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 MAGEB17A8MXT2 336 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 I6L893 689 aaPredicted RBP10.77□□□□□ -0.68
CLN3-244ENST00000636147 KIAA0513O60268 411 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 CLDN9O95484 217 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 CPNE6O95741 557 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 TRBC1P01850 177 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 YES1P07947 543 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 MYL12AP19105 171 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 EDNRBP24530 442 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 AFF1P51825 1210 aaKnown RBP10.77□□□□□ -0.68
CLN3-244ENST00000636147 RPS24P62847 133 aaKnown RBP10.77□□□□□ -0.68
CLN3-244ENST00000636147 FCHO2Q0JRZ9 810 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 ZNF181Q2M3W8 571 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 COQ5Q5HYK3 327 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 FAM171A1Q5VUB5 890 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 PSAPL1Q6NUJ1 521 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 RGL4Q8IZJ4 473 aa10.77□□□□□ -0.68
CLN3-244ENST00000636147 METTL4Q8N3J2 472 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms