RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 RHBDL2Q9NX52 303 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 PPT2Q9UMR5 302 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 BRCA2P51587 3418 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 ANAPC1Q9H1A4 1944 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 HS6ST1O60243 411 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 NUAK1O60285 661 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 BCL10O95999 233 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 CCDC159P0C7I6 412 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF12P17014 697 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 SDC1P18827 310 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 HNMTP50135 292 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 RAD23AP54725 363 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 TPD52P55327 224 aaPredicted RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 C21orf59P57076 290 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 VAC14Q08AM6 782 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 ASB11Q8WXH4 323 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 ABTB1Q969K4 478 aaPredicted RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 MTFMTQ96DP5 389 aaKnown RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 PLEKHA8Q96JA3 519 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 MCCC1Q96RQ3 725 aaPredicted RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 PCDHGB1Q9Y5G3 927 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 TET1Q8NFU7 2136 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 M0QX08 132 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 SLC1A7O00341 560 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 MPC1LP0DKB6 136 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 PCMT1P22061 227 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 TACR1P25103 407 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 BMXP51813 675 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 EPHB3P54753 998 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 MTAPQ13126 283 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 DPY19L1Q2PZI1 675 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 PLEKHG6Q3KR16 790 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 ATP13A5Q4VNC0 1218 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 TXNDC8Q6A555 127 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 CES5AQ6NT32 575 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 UBE2R2Q712K3 238 aaPredicted RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF551Q7Z340 670 aaPredicted RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF554Q86TJ5 538 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 TCEAL8Q8IYN2 117 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 TTC16Q8NEE8 873 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 FIBINQ8TAL6 211 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 FRS2Q8WU20 508 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 BHMTQ93088 406 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 HHIPL1Q96JK4 782 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 TRIT1Q9H3H1 467 aaKnown RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 ELOVL6Q9H5J4 265 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 KIAA1522Q9P206 1035 aaPredicted RBP12.43□□□□□ -0.42
LINC00540-203ENST00000631321 CLEC4EQ9ULY5 219 aa12.43□□□□□ -0.42
LINC00540-203ENST00000631321 SLC16A5O15375 505 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 E2F6O75461 281 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 CLPXO76031 633 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 CCNDBP1O95273 360 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 INHAP05111 366 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 PFKLP17858 780 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 AGXTP21549 392 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 PRKACGP22612 351 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 CDKN2CP42773 168 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 TRPC1P48995 793 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 PTSQ03393 145 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 SP140Q13342 867 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 CPZQ66K79 652 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 LRRC66Q68CR7 880 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 HTR3DQ70Z44 454 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 SERPINA11Q86U17 422 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 PAF1Q8N7H5 531 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 RAET1EQ8TD07 263 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 TRUB1Q8WWH5 349 aaKnown RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 LMLNQ96KR4 655 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 BEGAINQ9BUH8 593 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 HERC2P3Q9BVR0 1158 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 VNN3Q9NY84 501 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 LMCD1Q9NZU5 365 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 LSM7Q9UK45 103 aaKnown RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 INTS6Q9UL03 887 aaKnown RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 SAMD4AQ9UPU9 718 aaKnown RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 ORC6Q9Y5N6 252 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 INSL5Q9Y5Q6 135 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 A8MX80 341 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 PRRG1O14668 218 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 CBFA2T3O75081 653 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 OR56A5P0C7T3 313 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 MYCLP1P12525 358 aaPredicted RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 AMD1P17707 334 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 MPPE1Q53F39 396 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 ZDHHC20Q5W0Z9 365 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 NEK5Q6P3R8 708 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 SLC16A12Q6ZSM3 486 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 USP45Q70EL2 814 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 ANKRD13BQ86YJ7 626 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 ZDHHC21Q8IVQ6 265 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 GIPC3Q8TF64 312 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 APIPQ96GX9 242 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 MAGEB10Q96LZ2 347 aaPredicted RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 TSSK3Q96PN8 268 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 BCL7BQ9BQE9 202 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 FUNDC2Q9BWH2 189 aa12.42□□□□□ -0.42
LINC00540-203ENST00000631321 HMX1Q9NP08 348 aaPredicted RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 PAK1IP1Q9NWT1 392 aaPredicted RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 THG1LQ9NWX6 298 aaKnown RBP12.42□□□□□ -0.42
LINC00540-203ENST00000631321 GPRC5BQ9NZH0 403 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms