RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SNX6Q9UNH7 406 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 EIF3LQ9Y262 564 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 A0A1W2PP55 124 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 PCDH8O95206 1070 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 ACADSP16219 412 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 PEX2P28328 305 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 TRAP1Q12931 704 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 GTF2H3Q13889 308 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 NFE2L1Q14494 772 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 PNCKQ6P2M8 343 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 DOK6Q6PKX4 331 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 IZUMO2Q6UXV1 221 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 CYP2R1Q6VVX0 501 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 FAM83HQ6ZRV2 1179 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 HEATR4Q86WZ0 1026 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 PQLC1Q8N2U9 271 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 HDDC3Q8N4P3 179 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 LMNTD1Q8N9Z9 388 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 TMEM125Q96AQ2 219 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 LINC00615Q96LM1 132 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 FOPNLQ96NB1 174 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 ZNF184Q99676 751 aaPredicted RBP16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 CKAP5Q14008 2032 aa16.55■□□□□ 0.24
SHKBP1-216ENST00000598201 MYO10Q9HD67 2058 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 E7EQ34 232 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 JUPP14923 745 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 VARSP26640 1264 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 FOXM1Q08050 763 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 CMPK2Q5EBM0 449 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 ZFP1Q6P2D0 407 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 ADAMTSL4Q6UY14 1074 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 LILRA2Q8N149 483 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 KRTCAP2Q8N6L1 136 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 OR56A3Q8NH54 315 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 ATL1Q8WXF7 558 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 RSRC1Q96IZ7 334 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 ASIC5Q9NY37 505 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 DLGAP4Q9Y2H0 992 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 TRPM6Q9BX84 2022 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 PRSS51A0A1B0GVH4 220 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 AP1G1O43747 822 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 VEGFDO43915 354 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 C8BP07358 591 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 BCKDHAP12694 445 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 C5AR1P21730 350 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 TNFRSF4P43489 277 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 IRF8Q02556 426 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 MAD2L1Q13257 205 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 TDGQ13569 410 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 TRIP10Q15642 601 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 MAP7D1Q3KQU3 841 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 USP39Q53GS9 565 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 XKR6Q5GH73 641 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 FRG2Q64ET8 278 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 TRMT11Q7Z4G4 463 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 KLHDC8AQ8IYD2 350 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 GJD3Q8N144 294 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 SPDYE1Q8NFV5 336 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 OR2L2Q8NH16 312 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 CLHC1Q8NHS4 586 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 ZNF514Q96K75 400 aaPredicted RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 TMEM74Q96NL1 305 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 FRG2BQ96QU4 278 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 MKRN2Q9H000 416 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 MBNL1Q9NR56 388 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 GPR34Q9UPC5 381 aa16.54■□□□□ 0.24
SHKBP1-216ENST00000598201 F5P12259 2224 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 TICRRQ7Z2Z1 1910 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 C17orf113A0A1B0GUU1 675 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 CASQ2O14958 399 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 RNASEH1O60930 286 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 HSD17B1P14061 328 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 ATP6V1B2P21281 511 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 RPS14P62263 151 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 CDK3Q00526 305 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 DOC2AQ14183 400 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 FGL2Q14314 439 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 DLEU7Q6UYE1 221 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 DPP10Q8N608 796 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 ZNF480Q8WV37 535 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 APIPQ96GX9 242 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 ECSITQ9BQ95 431 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 SLC6A17Q9H1V8 727 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 COPS7BQ9H9Q2 264 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 SLC23A2Q9UGH3 650 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 ZFR2Q9UPR6 939 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 DOCK9Q9BZ29 2069 aa16.53■□□□□ 0.24
SHKBP1-216ENST00000598201 MGAT4DA6NG13 374 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 RNASEH2AO75792 299 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 ADH1BP00325 375 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 MAPK9P45984 424 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 PLIN5Q00G26 463 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 SFT2D3Q587I9 215 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 CACHD1Q5VU97 1274 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 LIPJQ5W064 366 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 NANOGP8Q6NSW7 305 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 DHFR2Q86XF0 187 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 FBXO15Q8NCQ5 510 aaPredicted RBP16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 HM13Q8TCT9 377 aa16.52■□□□□ 0.24
SHKBP1-216ENST00000598201 SLCO4A1Q96BD0 722 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms