RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ALOXE3Q9BYJ1 711 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 PDFQ9HBH1 243 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 CPQQ9Y646 472 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 MT-ND2P03891 347 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 KLKB1P03952 638 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 LCKP06239 509 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 CLCN7P51798 805 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 P2RY8Q86VZ1 359 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 GATAD2AQ86YP4 633 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 DPP10Q8N608 796 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 OR52J3Q8NH60 311 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 CHPT1Q8WUD6 406 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 UROC1Q96N76 676 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 HEBP1Q9NRV9 189 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 FNIP2Q9P278 1114 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 SPEF1Q9Y4P9 236 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 TBL1XO60907 577 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 MTX2O75431 263 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 RECQL5O94762 991 aaPredicted RBP14.9□□□□□ -0.02
UPF1-204ENST00000596842 ELNP15502 786 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 NUDT6P53370 316 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 GRIK2Q13002 908 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 ADPRMQ3LIE5 342 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 RTP2Q5QGT7 225 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 MSRB3Q8IXL7 192 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 ASIC4Q96FT7 647 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 ASPSCR1Q9BZE9 553 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 DHRS7Q9Y394 339 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 TAPBPO15533 448 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 IFNA8P32881 189 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 NR4A2P43354 598 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 COPZ1P61923 177 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 PPP2R2BQ00005 443 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 GRSF1Q12849 480 aaKnown RBP eCLIP14.89□□□□□ -0.03
UPF1-204ENST00000596842 IRAK1BP1Q5VVH5 260 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 GTF2IRD2BQ6EKJ0 949 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 NIPAL1Q6NVV3 410 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 GTF2IRD2Q86UP8 949 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 OR5K1Q8NHB7 308 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 FUBP3Q96I24 572 aaKnown RBP eCLIP14.89□□□□□ -0.03
UPF1-204ENST00000596842 REXO5Q96IC2 774 aaKnown RBP14.89□□□□□ -0.03
UPF1-204ENST00000596842 PANX1Q96RD7 426 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 ZNF347Q96SE7 839 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 C1orf109Q9NX04 203 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 EVPLLA8MZ36 301 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 IDH2P48735 452 aaKnown RBP14.89□□□□□ -0.03
UPF1-204ENST00000596842 ISL1P61371 349 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 PLD1Q13393 1074 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 CDH18Q13634 790 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 CYP27C1Q4G0S4 372 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 CARD16Q5EG05 197 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 TAS1R1Q7RTX1 841 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 SLC22A16Q86VW1 577 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 CYP4Z1Q86W10 505 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 STARD8Q92502 1023 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 EID2BQ96D98 161 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 MYO16Q9Y6X6 1858 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 ADAM12O43184 909 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 OAZ2O95190 189 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 CLK3P49761 638 aaKnown RBP14.89□□□□□ -0.03
UPF1-204ENST00000596842 RPS14P62263 151 aaKnown RBP14.89□□□□□ -0.03
UPF1-204ENST00000596842 SLC14A1Q13336 389 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 GPR162Q16538 588 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 PDE12Q6L8Q7 609 aaKnown RBP14.89□□□□□ -0.03
UPF1-204ENST00000596842 KIAA1841Q6NSI8 718 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 SLC16A12Q6ZSM3 486 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 TMEM132CQ8N3T6 1108 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 ZNF639Q9UID6 485 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 ENPP5Q9UJA9 477 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 GABRQQ9UN88 632 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 NOX1Q9Y5S8 564 aa14.89□□□□□ -0.03
UPF1-204ENST00000596842 IFRD1O00458 451 aaPredicted RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 TBX1O43435 398 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 SULT1C4O75897 302 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 PGLSO95336 258 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ST13P50502 369 aaKnown RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 WDR45BQ5MNZ6 344 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ANKS3Q6ZW76 656 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 TMEM173Q86WV6 379 aaPredicted RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 P3H2Q8IVL5 708 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 SYTL1Q8IYJ3 562 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 TTC29Q8NA56 475 aaPredicted RBP14.88□□□□□ -0.03
UPF1-204ENST00000596842 OR8J3Q8NGG0 315 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 TADA1Q96BN2 335 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ALPK1Q96QP1 1244 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ZFYVE1Q9HBF4 777 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 TBC1D14Q9P2M4 693 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 PIKFYVEQ9Y2I7 2098 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ANKRD28O15084 1053 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 STK16O75716 305 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 PDYNP01213 254 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 OR1D2P34982 312 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 CDH4P55283 916 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 PHC1P78364 1004 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 CACNG1Q06432 222 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 DGUOKQ16854 277 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 PEX13Q92968 403 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 ZHX1-C8orf76Q96EF9 292 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 CD84Q9UIB8 345 aa14.88□□□□□ -0.03
UPF1-204ENST00000596842 DOCK4Q8N1I0 1966 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms