RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 METTL27Q8N6F8 245 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 ACBD4Q8NC06 268 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 ZNF398Q8TD17 642 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 BRIX1Q8TDN6 353 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 HAS2Q92819 552 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 CCM2Q9BSQ5 444 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 C10orf88Q9H8K7 445 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 FAM153AQ9UHL3 310 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 ICKQ9UPZ9 632 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 KLHL20Q9Y2M5 609 aa13.17□□□□□ -0.3
SHKBP1-208ENST00000595726 JMJD1CQ15652 2540 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 MIF4GDA9UHW6 222 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 H7C0C1 242 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 FAM155BO75949 473 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 CRYABP02511 175 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 CELA2AP08217 269 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 KLK2P20151 261 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 OR1D4P47884 311 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 ATP5OP48047 213 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 IST1P53990 364 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 INAQ16352 499 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 UNC5AQ6ZN44 842 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 PID1Q7Z2X4 250 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 TGIF2LYQ8IUE0 185 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 UBL4BQ8N7F7 174 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 DNAJB8Q8NHS0 232 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 FLVCR1-AS1Q8TAF5 88 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 DTX3LQ8TDB6 740 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 FKBP10Q96AY3 582 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 OXNAD1Q96HP4 312 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 FCRL5Q96RD9 977 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 FAM118BQ9BPY3 351 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 WDR54Q9H977 334 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 MRM3Q9HC36 420 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 PLCL2Q9UPR0 1127 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 MEMO1Q9Y316 297 aa13.16□□□□□ -0.3
SHKBP1-208ENST00000595726 LOC285095A0A1B0GVY8 99 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 A0A1B0GX78 115 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 FANCGO15287 622 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 TJP3O95049 919 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 WDPCPO95876 746 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 HPP00738 406 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 ALBP02768 609 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 PRR35P0CG20 571 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 RBP3P10745 1247 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 MCM3P25205 808 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 DNAJA1P31689 397 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 SOX11P35716 441 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 CETN2P41208 172 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 GCGRP47871 477 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 WNT3AP56704 352 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 EIF3EP60228 445 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 ITGA9Q13797 1035 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 SLC5A12Q1EHB4 618 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 BCL7AQ4VC05 210 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 SIRPB2Q5JXA9 342 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 C3P1Q6ZMU1 363 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 CDKL3Q8IVW4 592 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 KBTBD2Q8IY47 623 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 RNF10Q8N5U6 811 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 CCDC110Q8TBZ0 833 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 BLOC1S5Q8TDH9 187 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 HES6Q96HZ4 224 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 MRGPRX2Q96LB1 330 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 LINC00615Q96LM1 132 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 SRPK1Q96SB4 655 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 GORASP1Q9BQQ3 440 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 TSGA10Q9BZW7 698 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 TSPAN10Q9H1Z9 355 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 GBA3Q9H227 469 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 SLC26A1Q9H2B4 701 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 OR52A5Q9H2C5 316 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 GPAMQ9HCL2 828 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 EURLQ9NYK6 297 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 RSPH14Q9UHP6 348 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 TRHDEQ9UKU6 1024 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 MAU2Q9Y6X3 613 aa13.15□□□□□ -0.3
SHKBP1-208ENST00000595726 ABCA4P78363 2273 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 NSD1Q96L73 2696 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 FAM221AA4D161 298 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 ONECUT2O95948 504 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 TPBGLP0DKB5 382 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 KLF1Q13351 362 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 MPP3Q13368 585 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 BOP1Q14137 746 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 ZDHHC20Q5W0Z9 365 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 MICALCLQ6ZW33 695 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 GLT6D1Q7Z4J2 308 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 SPPL2CQ8IUH8 684 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 MCATQ8IVS2 390 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 HM13Q8TCT9 377 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 TFGQ92734 400 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 TREX2Q9BQ50 279 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 CRB3Q9BUF7 120 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 TRABDQ9H4I3 376 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 SMOXQ9NWM0 555 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 TNFRSF10DQ9UBN6 386 aa13.14□□□□□ -0.31
SHKBP1-208ENST00000595726 GUCA1BQ9UMX6 200 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms