RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 EZH1Q92800 747 aaPredicted RBP13.78□□□□□ -0.2
LIG3-205ENST00000585941 VPS33AQ96AX1 596 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 REPS1Q96D71 796 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 MED8Q96G25 268 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 C1QTNF2Q9BXJ5 285 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 ACTL8Q9H568 366 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 WDR26Q9H7D7 661 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 CD207Q9UJ71 328 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 PACSIN3Q9UKS6 424 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 PCDHGA11Q9Y5H2 935 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 MTCH2Q9Y6C9 303 aa13.78□□□□□ -0.2
LIG3-205ENST00000585941 ASPDHA6ND91 283 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 PLRG1O43660 514 aaKnown RBP13.77□□□□□ -0.21
LIG3-205ENST00000585941 C8BP07358 591 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 C7P10643 843 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 ACADSP16219 412 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 SLC6A2P23975 617 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 IL12AP29459 219 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 HSD17B2P37059 387 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 EEFSECP57772 596 aaKnown RBP13.77□□□□□ -0.21
LIG3-205ENST00000585941 GRSF1Q12849 480 aaKnown RBP eCLIP13.77□□□□□ -0.21
LIG3-205ENST00000585941 KIAA0040Q15053 153 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 AAK1Q2M2I8 961 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 TMEM196Q5HYL7 178 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 IRAK1BP1Q5VVH5 260 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 SLC15A3Q8IY34 581 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 SYTL1Q8IYJ3 562 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 LIX1Q8N485 282 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 GOLM1Q8NBJ4 401 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 DNASE1L2Q92874 299 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 ZUFSPQ96AP4 578 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 RAD51AP1Q96B01 352 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 EHD1Q9H4M9 534 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 RMI1Q9H9A7 625 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 BRF2Q9HAW0 419 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 IL1RL2Q9HB29 575 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 PREBQ9HCU5 417 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 FZD4Q9ULV1 537 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 TMEM98Q9Y2Y6 226 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 DYRK1BQ9Y463 629 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 PCDHA9Q9Y5H5 950 aa13.77□□□□□ -0.21
LIG3-205ENST00000585941 CDH23Q9H251 3354 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 C9JVG2 144 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 H3BNX3 289 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 NME4O00746 187 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 CASQ2O14958 399 aaPredicted RBP13.76□□□□□ -0.21
LIG3-205ENST00000585941 KCNJ13O60928 360 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 BCKDHAP12694 445 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 HOXB2P14652 356 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 TCN1P20061 433 aaPredicted RBP13.76□□□□□ -0.21
LIG3-205ENST00000585941 ATP6V1C1P21283 382 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 KELP23276 732 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 ERFP50548 548 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 CLDN8P56748 225 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 RHDQ02161 417 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 DOC2AQ14183 400 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 NFE2L1Q14494 772 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 IRF4Q15306 451 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 CCSMST1Q4G0I0 132 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 USP39Q53GS9 565 aaKnown RBP13.76□□□□□ -0.21
LIG3-205ENST00000585941 XKR5Q6UX68 686 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 SPATA24Q86W54 205 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 DHFR2Q86XF0 187 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 HID1Q8IV36 788 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 PQLC1Q8N2U9 271 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 IL17RCQ8NAC3 791 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 SETD7Q8WTS6 366 aaKnown RBP13.76□□□□□ -0.21
LIG3-205ENST00000585941 ZNF480Q8WV37 535 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 ASB12Q8WXK4 309 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 MTFMTQ96DP5 389 aaKnown RBP13.76□□□□□ -0.21
LIG3-205ENST00000585941 ERLEC1Q96DZ1 483 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 DUS3LQ96G46 650 aaKnown RBP13.76□□□□□ -0.21
LIG3-205ENST00000585941 NAF1Q96HR8 494 aaKnown RBP13.76□□□□□ -0.21
LIG3-205ENST00000585941 LRGUKQ96M69 825 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 SLC39A3Q9BRY0 314 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 SGPP1Q9BX95 441 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 OR52A5Q9H2C5 316 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 SERGEFQ9UGK8 458 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 ACSL5Q9ULC5 683 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 AP3M1Q9Y2T2 418 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 F5P12259 2224 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 COL4A2P08572 1712 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 LAMA3Q16787 3333 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 C5orf42Q9H799 3197 aa13.76□□□□□ -0.21
LIG3-205ENST00000585941 ZNF839A8K0R7 811 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 E7EQ34 232 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PI15O43692 258 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PEX1O43933 1283 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PRAMEF4O60810 478 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 KLF8O95600 359 aaPredicted RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 MYCLP1P12525 358 aaPredicted RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 GLULP15104 373 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 MSX2P35548 267 aaPredicted RBP13.75□□□□□ -0.21
LIG3-205ENST00000585941 DMPKQ09013 629 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PWP1Q13610 501 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 INPP5AQ14642 412 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 ARHGAP19Q14CB8 494 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 TMEM259Q4ZIN3 620 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PAGE2BQ5JRK9 111 aa13.75□□□□□ -0.21
LIG3-205ENST00000585941 PAGE3Q5JUK9 113 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms