RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SLC38A3Q99624 504 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 SEMA6CQ9H3T2 930 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 NMRAL1Q9HBL8 299 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 INTS7Q9NVH2 962 aaKnown RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 UTP6Q9NYH9 597 aaKnown RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 OR6C2Q9NZP2 312 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 PTBP2Q9UKA9 531 aaKnown RBP8.98□□□□□ -0.97
VPS35-211ENST00000569950 TLK1Q9UKI8 766 aa8.98□□□□□ -0.97
VPS35-211ENST00000569950 CCDC189A1A4V9 331 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 PLIN3O60664 434 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 CPNE6O95741 557 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 GUCA1CO95843 209 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 MT-ND3P03897 115 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 RPN2P04844 631 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 GSTA1P08263 222 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 THRAP10827 490 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 UGT2B7P16662 529 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 KRT15P19012 456 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 SHMT2P34897 504 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 GDF5P43026 501 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 MAPK9P45984 424 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 PNLIPRP1P54315 467 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 TBPL1P62380 186 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 ARHGAP19Q14CB8 494 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 C16orf72Q14CZ0 275 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 FAM83EQ2M2I3 478 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 AMZ1Q400G9 498 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 CDKL4Q5MAI5 379 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 N4BP2L1Q5TBK1 243 aaPredicted RBP8.97□□□□□ -0.97
VPS35-211ENST00000569950 LGSNQ5TDP6 509 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 CES4AQ5XG92 561 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 ANKS6Q68DC2 871 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 SUSD1Q6UWL2 747 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 ATG14Q6ZNE5 492 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 TRIM73Q86UV7 250 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 TAX1BP1Q86VP1 789 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 LCA5Q86VQ0 697 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 GPSM1Q86YR5 675 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 SRRM1Q8IYB3 904 aaKnown RBP8.97□□□□□ -0.97
VPS35-211ENST00000569950 DCBLD1Q8N8Z6 715 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 MCOLN3Q8TDD5 553 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 UBTD2Q8WUN7 234 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 ADAMTS14Q8WXS8 1223 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 PYCR2Q96C36 320 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 MOCOSQ96EN8 888 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 APOPT1Q96IL0 206 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 CABS1Q96KC9 395 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 CCDC138Q96M89 665 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 FOPNLQ96NB1 174 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 MRPL57Q9BQC6 102 aaKnown RBP8.97□□□□□ -0.97
VPS35-211ENST00000569950 ATG10Q9H0Y0 220 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 SRMSQ9H3Y6 488 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 EPB41L1Q9H4G0 881 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 SLC6A20Q9NP91 592 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 HRASLS2Q9NWW9 162 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 CPSF2Q9P2I0 782 aaKnown RBP8.97□□□□□ -0.97
VPS35-211ENST00000569950 SLC17A7Q9P2U7 560 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 KLK4Q9Y5K2 254 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 APC2O95996 2303 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 ZFHX4Q86UP3 3567 aa8.97□□□□□ -0.97
VPS35-211ENST00000569950 SDK2Q58EX2 2172 aa8.96□□□□□ -0.97
VPS35-211ENST00000569950 ZZEF1O43149 2961 aa8.96□□□□□ -0.97
VPS35-211ENST00000569950 IGHV5-51A0A0C4DH38 117 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 A0A1B0GTL3 188 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 A8MT66 165 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 H3BMH7 237 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 CAPN5O15484 640 aaPredicted RBP8.96□□□□□ -0.98
VPS35-211ENST00000569950 RGS16O15492 202 aaPredicted RBP8.96□□□□□ -0.98
VPS35-211ENST00000569950 HYAL3O43820 417 aaPredicted RBP8.96□□□□□ -0.98
VPS35-211ENST00000569950 DLX3O60479 287 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 SPAG7O75391 227 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 SIX3O95343 332 aaPredicted RBP8.96□□□□□ -0.98
VPS35-211ENST00000569950 ANKRD34CP0C6C1 535 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 DHRS4L1P0CG22 281 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 PVRP15151 417 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 ST6GAL1P15907 406 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 NPPBP16860 134 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 CYP2A7P20853 494 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 MPSTP25325 297 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 PRDX3P30048 256 aaKnown RBP8.96□□□□□ -0.98
VPS35-211ENST00000569950 NFKB2Q00653 900 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 CAMK2BQ13554 666 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 NAE1Q13564 534 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 E2F2Q14209 437 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 PCLAFQ15004 111 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 SETDB1Q15047 1291 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 PLCL1Q15111 1095 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 CLPPQ16740 277 aaPredicted RBP8.96□□□□□ -0.98
VPS35-211ENST00000569950 TSNAXIP1Q2TAA8 658 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 PTCHD3Q3KNS1 767 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 KIAA1614Q5VZ46 1190 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 FCRL6Q6DN72 434 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 ZNF425Q6IV72 752 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 TMEM71Q6P5X7 295 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 SPESP1Q6UW49 350 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 HDXQ7Z353 690 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 PRSS42Q7Z5A4 293 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 CACTIN-AS1Q8N1I8 211 aa8.96□□□□□ -0.98
VPS35-211ENST00000569950 OR4D9Q8NGE8 314 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms