RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 OR6C74A6NCV1 312 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 CASC3O15234 703 aaKnown RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 KDM1AO60341 852 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 CBFA2T3O75081 653 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 CHRM5P08912 532 aaPredicted RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 FGF3P11487 239 aaPredicted RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 HSD17B2P37059 387 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 DNAJB13P59910 316 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 PCBP2Q15366 365 aaKnown RBP eCLIP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 UNC50Q53HI1 259 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 LIPMQ5VYY2 423 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 CES4AQ5XG92 561 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 SUSD1Q6UWL2 747 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 RPS27LQ71UM5 84 aaKnown RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 EFL1Q7Z2Z2 1120 aaKnown RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 SLC22A9Q8IVM8 553 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 RAB42Q8N4Z0 105 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 RHBDD1Q8TEB9 315 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 CCDC126Q96EE4 140 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 L3HYPDHQ96EM0 354 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 MOCOSQ96EN8 888 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 CNDP2Q96KP4 475 aaKnown RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 SLC38A3Q99624 504 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 SGPP1Q9BX95 441 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 PITPNM3Q9BZ71 974 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 CD244Q9BZW8 370 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 SPHK1Q9NYA1 384 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 OR6C2Q9NZP2 312 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 FTSJ1Q9UET6 329 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 DNAH14Q0VDD8 3507 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 ZNF292O60281 2723 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 ZNF839A8K0R7 811 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 BIRC5O15392 142 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 PRICKLE3O43900 615 aaPredicted RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 STK16O75716 305 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 LDOC1O95751 146 aaPredicted RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 TYRP1P17643 537 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 PSMB5P28074 263 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 EPHA4P54764 986 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 OR1D5P58170 312 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 HERVK_113P63132 956 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 DAB2P98082 770 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 TSTA3Q13630 321 aaPredicted RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 ZNF678Q5SXM1 525 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 ZCCHC23Q6ZST2 131 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 LRRC70Q7Z2Q7 622 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 SPRED1Q7Z699 444 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 ARFGAP2Q8N6H7 521 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 OR6C4Q8NGE1 309 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 OR10G6Q8NH81 332 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 FLVCR1-AS1Q8TAF5 88 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 FAM76AQ8TAV0 307 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 SMPDL3AQ92484 453 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 MED8Q96G25 268 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 NSUN5Q96P11 429 aaKnown RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 OR4K3Q96R72 315 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 GATA5Q9BWX5 397 aaPredicted RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 C1QTNF3Q9BXJ4 246 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 ERVK-6Q9BXR3 956 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 CCDC177Q9NQR7 707 aaPredicted RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 INTS9Q9NV88 658 aaKnown RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 INTS7Q9NVH2 962 aaKnown RBP16.04■□□□□ 0.16
VPS4A-202ENST00000562754 KCNK4Q9NYG8 393 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 PCTPQ9UKL6 214 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 SH2B3Q9UQQ2 575 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 PCM1Q15154 2024 aa16.04■□□□□ 0.16
VPS4A-202ENST00000562754 IGHV1OR21-1A0A087WYE8 117 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 OR5K3A6NET4 321 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 E2F3O00716 465 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 B4GAT1O43505 415 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 CCNT2O60583 730 aaKnown RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 TRIM13O60858 407 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 UBXN7O94888 489 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 WDR47O94967 919 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 PROS1P07225 676 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 PNLIPP16233 465 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 POLR2CP19387 275 aaPredicted RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 IMPDH1P20839 514 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 BGNP21810 368 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 ALDH4A1P30038 563 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 GPR3P46089 330 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 CAPZBP47756 277 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 NAGLUP54802 743 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 PPP1CAP62136 330 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 CAPN13Q6MZZ7 669 aaPredicted RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 RAB44Q7Z6P3 723 aaPredicted RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 PIP4P1Q86T03 277 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 THOC6Q86W42 341 aaKnown RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 NUDCD3Q8IVD9 361 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 Q8N9G6 341 aaPredicted RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 OR6Y1Q8NGX8 325 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 IFI44Q8TCB0 444 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 ZNF483Q8TF39 744 aaPredicted RBP16.03■□□□□ 0.16
VPS4A-202ENST00000562754 NAT6Q93015 286 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 GSTO2Q9H4Y5 243 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 ABCF3Q9NUQ8 709 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 DNAJC11Q9NVH1 559 aa16.03■□□□□ 0.16
VPS4A-202ENST00000562754 OPTCQ9UBM4 332 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms