RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KIR3DL1P43629 444 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 AP2B1P63010 937 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 SRSF5Q13243 272 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 UBAP2Q5T6F2 1119 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 BANPQ8N9N5 519 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 PRR11Q96HE9 360 aaPredicted RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 NSUN5Q96P11 429 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 PLEKHG4BQ96PX9 1271 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 KCTD14Q9BQ13 255 aaPredicted RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 TEX12Q9BXU0 123 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TAGLN3Q9UI15 199 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TMCO1Q9UM00 188 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 SNX7Q9UNH6 387 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TRPM6Q9BX84 2022 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 IGLV3-10A0A075B6K4 115 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 FEZF1A0PJY2 475 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 FAM92AA1XBS5 289 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TMEM150CB9EJG8 249 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 FAM47E-STBD1D6RA91 191 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 C5orf67F2Z3F1 127 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 GTPBP1O00178 669 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 RTCAO00442 366 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 DUX1O43812 170 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 KERAO60938 352 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 PVRP15151 417 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 AGXTP21549 392 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 PIK3R1P27986 724 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 HOXC13P31276 330 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 RPS14P62263 151 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 ZCCHC8Q6NZY4 707 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 TMEM150AQ86TG1 271 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 C1orf52Q8N6N3 182 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 OR4F6Q8NGB9 312 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 SP7Q8TDD2 431 aaPredicted RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 ADAMTS15Q8TE58 950 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 NSMCE2Q96MF7 247 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 SMAD5Q99717 465 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 YIPF4Q9BSR8 244 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 ERVK-11Q9UQG0 969 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 PCDHB3Q9Y5E6 796 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 FADS3Q9Y5Q0 445 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 CLCA3PQ9Y6N3 262 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 MYOFQ9NZM1 2061 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 DICER1Q9UPY3 1922 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 TRIP11Q15643 1979 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 ZCWPW2A0A1B0GU75 182 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 KRT87PA6NCN2 255 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 GRXCR2A6NFK2 248 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 PRR5-ARHGAP8B1AHC4 643 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 K7ESM1 405 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 VPS4BO75351 444 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 SLC22A3O75751 556 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 VNN2O95498 520 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 AVPR1BP47901 424 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 AFF3P51826 1226 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 WDR4P57081 412 aaKnown RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 FGD3Q5JSP0 725 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 OTUD3Q5T2D3 398 aaPredicted RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 KIAA0895LQ68EN5 471 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TTLL10Q6ZVT0 673 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 DPPA4Q7L190 304 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 THAP3Q8WTV1 239 aaPredicted RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 BIRC7Q96CA5 298 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 ZDHHC12Q96GR4 267 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 MACROD1Q9BQ69 325 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 EFCAB11Q9BUY7 163 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TTYH1Q9H313 450 aaPredicted RBP8.99□□□□□ -0.97
VPS39-205ENST00000562258 SMOC1Q9H4F8 434 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TM7SF3Q9NS93 570 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 TTC36A6NLP5 189 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 OR5K4A6NMS3 321 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 B3GALT2O43825 422 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SNX3O60493 162 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SCN2BO60939 215 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ALDOAP04075 364 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 SNRPB2P08579 225 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 ZNF23P17027 643 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MAGP20916 626 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SHMT2P34897 504 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SUOXP51687 545 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MAZP56270 477 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 C18orf21Q32NC0 220 aaPredicted RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 VPS26BQ4G0F5 336 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 FRG2Q64ET8 278 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SPNS2Q8IVW8 549 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SPEM1Q8N4L4 309 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PLA2G15Q8NCC3 412 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ATXN2LQ8WWM7 1075 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 RCN3Q96D15 328 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 LRRC3BQ96PB8 259 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 FRG2BQ96QU4 278 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PDE7BQ9NP56 450 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MBNL1Q9NR56 388 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 STOX2Q9P2F5 926 aaPredicted RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 LRIT1Q9P2V4 623 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 EGFL7Q9UHF1 273 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MAP4K5Q9Y4K4 846 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SIPA1L1O43166 1804 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 DOCK6Q96HP0 2047 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 FAM221BA6H8Z2 402 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms