RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SLC29A3Q9BZD2 475 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 TMEM168Q9H0V1 697 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 RIC8BQ9NVN3 520 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 TAS2R1Q9NYW7 299 aa20.63■□□□□ 0.89
CLN3-209ENST00000561689 KCNE1BA0A087WTH5 132 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 A0A1W2PPC4 97 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 MEI4A8MW99 385 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 CLGNO14967 610 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 WFS1O76024 890 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 RASGRP1O95267 797 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 PRR35P0CG20 571 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 RABIFP47224 123 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 CTBSQ01459 385 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 SQLEQ14534 574 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 HID1Q8IV36 788 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 LRRC56Q8IYG6 542 aaPredicted RBP20.62■□□□□ 0.89
CLN3-209ENST00000561689 MIPEPQ99797 713 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 BTBD10Q9BSF8 475 aa20.62■□□□□ 0.89
CLN3-209ENST00000561689 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-209ENST00000561689 TNFRSF10CO14798 259 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 GYG2O15488 501 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 NDUFS2O75306 463 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 RASSF9O75901 435 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 NQO1P15559 274 aaKnown RBP20.61■□□□□ 0.89
CLN3-209ENST00000561689 CD22P20273 847 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 NEK2P51955 445 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 NME5P56597 212 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 ZRSR2Q15696 482 aaKnown RBP20.61■□□□□ 0.89
CLN3-209ENST00000561689 GGTA1PQ4G0N0 100 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 SNX32Q86XE0 403 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 CHCHD4Q8N4Q1 142 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 HMGCLL1Q8TB92 370 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 ORAI3Q9BRQ5 295 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 SGPP1Q9BX95 441 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 TBC1D10AQ9BXI6 508 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 SCHIP1Q9P0W5 487 aaPredicted RBP20.61■□□□□ 0.89
CLN3-209ENST00000561689 TBC1D29Q9UFV1 150 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 SLC22A2O15244 555 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 KRT6AP02538 564 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 KRT6BP04259 564 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 NPPBP16860 134 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 ADSLP30566 484 aaPredicted RBP20.61■□□□□ 0.89
CLN3-209ENST00000561689 RPS9P46781 194 aaKnown RBP20.61■□□□□ 0.89
CLN3-209ENST00000561689 KRT6CP48668 564 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 DIO3P55073 304 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 MXRA7P84157 204 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 HMGCS1Q01581 520 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 DOC2AQ14183 400 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 NR6A1Q15406 480 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 KIF19Q2TAC6 998 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 UAP1L1Q3KQV9 507 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 ATP6AP1LQ52LC2 224 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 C6orf136Q5SQH8 315 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 TBC1D21Q8IYX1 336 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 GJD3Q8N144 294 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 RBM15BQ8NDT2 890 aaKnown RBP20.61■□□□□ 0.89
CLN3-209ENST00000561689 USP7Q93009 1102 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 NEIL2Q969S2 332 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 C1orf50Q9BV19 199 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 ELOVL6Q9H5J4 265 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 SH2B3Q9UQQ2 575 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 KCNE2Q9Y6J6 123 aa20.61■□□□□ 0.89
CLN3-209ENST00000561689 CFAP73A6NFT4 308 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 PSMD12O00232 456 aaPredicted RBP20.6■□□□□ 0.89
CLN3-209ENST00000561689 PDYNP01213 254 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 KRT16P08779 473 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 GNAZP19086 355 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 PRDX6P30041 224 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 SLC30A9Q6PML9 568 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 PAOXQ6QHF9 649 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 FNDC5Q8NAU1 212 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 OR9I1Q8NGQ6 314 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 SLC6A18Q96N87 628 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 CCDC177Q9NQR7 707 aaPredicted RBP20.6■□□□□ 0.89
CLN3-209ENST00000561689 SNX6Q9UNH7 406 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 CCL27Q9Y4X3 112 aa20.6■□□□□ 0.89
CLN3-209ENST00000561689 PRAMEF33A0A0G2JMD5 474 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 LSM1O15116 133 aaKnown RBP20.59■□□□□ 0.89
CLN3-209ENST00000561689 EML2O95834 649 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 THEGLP0DJG4 465 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 THRAP10827 490 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 JUPP14923 745 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 VARSP26640 1264 aaKnown RBP20.59■□□□□ 0.89
CLN3-209ENST00000561689 CXCL12P48061 93 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 STX1BP61266 288 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 CYLC2Q14093 348 aaPredicted RBP20.59■□□□□ 0.89
CLN3-209ENST00000561689 KRT33BQ14525 404 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 AGKQ53H12 422 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 ZNF542PQ5EBM4 170 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 THEMIS2Q5TEJ8 643 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 LIPJQ5W064 366 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 OGFOD2Q6N063 350 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 SELENOMQ8WWX9 145 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 UTP4Q969X6 686 aaKnown RBP20.59■□□□□ 0.89
CLN3-209ENST00000561689 AASDHPPTQ9NRN7 309 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 CCDC167Q9P0B6 97 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 DNAH14Q0VDD8 3507 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 TOR1BO14657 336 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 RGS14O43566 566 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 PTK2BQ14289 1009 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms