RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CCT8L1PA6NM43 557 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 EVPLLA8MZ36 301 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 HTRA2O43464 458 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 EDF1O60869 148 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 NUDT14O95848 222 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 B3GALT4O96024 378 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 KLK1P06870 262 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 C8GP07360 202 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CD1DP15813 335 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 OXTRP30559 389 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 IGFALSP35858 605 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PRKCQQ04759 706 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 RGS1Q08116 209 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 C2orf80Q0P641 193 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CYLC2Q14093 348 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 HKDC1Q2TB90 917 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PUS10Q3MIT2 529 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 VPS26BQ4G0F5 336 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SLC9B1Q4ZJI4 515 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CTSL3PQ5NE16 218 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SULT1C3Q6IMI6 304 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 MED27Q6P2C8 311 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PAOXQ6QHF9 649 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ISLR2Q6UXK2 745 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 GCNT7Q6ZNI0 430 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 EFL1Q7Z2Z2 1120 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 GOLGA7Q7Z5G4 137 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CLNKQ7Z7G1 428 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 HMGN2P46Q86SG4 172 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 DCUN1D3Q8IWE4 304 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 OR4N5Q8IXE1 308 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 OR9A1PQ8NGU1 263 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 THAP3Q8WTV1 239 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SLC13A3Q8WWT9 602 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 FIG4Q92562 907 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 FUBP1Q96AE4 644 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 MSLNLQ96KJ4 702 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PLEKHG4BQ96PX9 1271 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 OR52B2Q96RD2 323 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 GAL3ST4Q96RP7 486 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 NUDT4Q9NZJ9 180 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 EPS15L1Q9UBC2 864 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 POLG2Q9UHN1 485 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ATXN7L1Q9ULK2 861 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 DUSP12Q9UNI6 340 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PDE10AQ9Y233 779 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 NCOR2Q9Y618 2525 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CCDC160A6NGH7 325 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CCDC154A6NI56 674 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF839A8K0R7 811 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ARHGEF33A8MVX0 844 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 MRASO14807 208 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 LIN7AO14910 233 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SNX3O60493 162 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 KERAO60938 352 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SLC35G6P0C7Q6 338 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 C7P10643 843 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 HPGDP15428 266 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 DRD3P35462 400 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CRATP43155 626 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 RABIFP47224 123 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 GSSP48637 474 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 HTR6P50406 440 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 RPS13P62277 151 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 HPCAP84074 193 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SPEM2Q0P670 501 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 STX4Q12846 297 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 DLG1Q12959 904 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SLC13A2Q13183 592 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 NNATQ16517 81 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 LEXMQ3ZCV2 418 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PIP5KL1Q5T9C9 394 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 POMZP3Q6PJE2 187 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 AMIGO1Q86WK6 493 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CENPLQ8N0S6 344 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 SPEM1Q8N4L4 309 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 C1orf52Q8N6N3 182 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 PCYOX1LQ8NBM8 494 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 FAM156AQ8NDB6 213 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF740Q8NDX6 193 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 WDR48Q8TAF3 677 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 TLCD1Q96CP7 247 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 CMTM5Q96DZ9 223 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 NLNQ9BYT8 704 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 LRTM1Q9HBL6 345 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 FARSBQ9NSD9 589 aaKnown RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 LRIT1Q9P2V4 623 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 EGFL7Q9UHF1 273 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 MBD1Q9UIS9 605 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-209ENST00000560637 ENTPD4Q9Y227 616 aa5.29□□□□□ -1.56
VPS13C-209ENST00000560637 KHNYNO15037 678 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 GREM1O60565 184 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MT-ND1P03886 318 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CELA2BP08218 269 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 JMJD7P0C870 316 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MYCLP1P12525 358 aaPredicted RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms