RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SLC26A6Q9BXS9 759 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 TDRD1Q9BXT4 1180 aaKnown RBP3.53□□□□□ -1.84
VPS13C-208ENST00000559119 KCNK15Q9H427 330 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 GPN1Q9HCN4 374 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-208ENST00000559119 SERINC1Q9NRX5 453 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 STUB1Q9UNE7 303 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 RUSC2Q8N2Y8 1516 aa3.53□□□□□ -1.84
VPS13C-208ENST00000559119 TSPAN1O60635 241 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 PRAMEF11O60813 436 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 CREG1O75629 220 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 POP4O95707 220 aaKnown RBP3.52□□□□□ -1.85
VPS13C-208ENST00000559119 TRUB2O95900 331 aaKnown RBP3.52□□□□□ -1.85
VPS13C-208ENST00000559119 PRKAR1AP10644 381 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 CHMP24386 653 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 CSTF2P33240 577 aaKnown RBP eCLIP3.52□□□□□ -1.85
VPS13C-208ENST00000559119 ARSEP51690 589 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 CD300CQ08708 224 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 ZNF74Q16587 644 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 FAM166AQ6J272 317 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 CHMP1BQ7LBR1 199 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 CEACAM19Q7Z692 300 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 NUDT13Q86X67 352 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 KRTAP11-1Q8IUC1 163 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 LRRC59Q96AG4 307 aaKnown RBP3.52□□□□□ -1.85
VPS13C-208ENST00000559119 SPAG5Q96R06 1193 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 TUBB1Q9H4B7 451 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 ORC3Q9UBD5 711 aaPredicted RBP3.52□□□□□ -1.85
VPS13C-208ENST00000559119 ZNF107Q9UII5 783 aaPredicted RBP3.52□□□□□ -1.85
VPS13C-208ENST00000559119 WIPI2Q9Y4P8 454 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 NME7Q9Y5B8 376 aa3.52□□□□□ -1.85
VPS13C-208ENST00000559119 TDRD9Q8NDG6 1382 aaKnown RBP3.51□□□□□ -1.85
VPS13C-208ENST00000559119 PCDH11YQ9BZA8 1340 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 LNP1A1A4G5 178 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 CDRT15L2A8MXV6 281 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 HPP00738 406 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 BCL3P20749 454 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 SLC9A3P48764 834 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 XGP55808 180 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 SIRPAP78324 504 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 G3BP1Q13283 466 aaKnown RBP eCLIP3.51□□□□□ -1.854e-7■■■■□ 24.8
VPS13C-208ENST00000559119 MAMLD1Q13495 774 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 EIPR1Q53HC9 387 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 SLC35D3Q5M8T2 416 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 FAM198BQ6UWH4 519 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 CDHR3Q6ZTQ4 885 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 ADCK1Q86TW2 530 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 LDB1Q86U70 411 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-208ENST00000559119 ZFAND4Q86XD8 727 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 FGFRL1Q8N441 504 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 SUMF1Q8NBK3 374 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 RFT1Q96AA3 541 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 C1orf147Q96MC9 270 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-208ENST00000559119 SPATC1LQ9H0A9 340 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 HCFC1P51610 2035 aa3.51□□□□□ -1.85
VPS13C-208ENST00000559119 MYO15BQ96JP2 1530 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 SHISA9B4DS77 424 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 H0YAE9 185 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 PDHA2P29803 388 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 DLK1P80370 383 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 LMOD3Q0VAK6 560 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 UGT3A1Q6NUS8 523 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 VITQ6UXI7 678 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 FAM131BQ86XD5 332 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 IL17REQ8NFR9 667 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 DHX58Q96C10 678 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 CCDC34Q96HJ3 373 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 FTOQ9C0B1 505 aaKnown RBP eCLIP3.5□□□□□ -1.85
VPS13C-208ENST00000559119 NYXQ9GZU5 481 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 HOXD1Q9GZZ0 328 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 GKN1Q9NS71 199 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 GTF2A1LQ9UNN4 478 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 TRIM17Q9Y577 477 aa3.5□□□□□ -1.85
VPS13C-208ENST00000559119 ANKUB1A6NFN9 424 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 OR10H2O60403 315 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 ZWINTO95229 277 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 OR2T7P0C7T2 308 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 JAK1P23458 1154 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 MFAP4P55083 255 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 CXCL9Q07325 125 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 ZNF415Q09FC8 603 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 CDH18Q13634 790 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 ZER1Q7Z7L7 766 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 ZBED8Q8IZ13 594 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 FBXO39Q8N4B4 442 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 NAXEQ8NCW5 288 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 TYMSOSQ8TAI1 123 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 USP6NLQ92738 828 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 CNOT6LQ96LI5 555 aaKnown RBP3.49□□□□□ -1.85
VPS13C-208ENST00000559119 CHCHD5Q9BSY4 110 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 ANP32EQ9BTT0 268 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 ITPAQ9BY32 194 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 TBC1D17Q9HA65 648 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 TRPV4Q9HBA0 871 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 C9orf78Q9NZ63 289 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-208ENST00000559119 PGAP2Q9UHJ9 254 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 PA2G4Q9UQ80 394 aaKnown RBP3.49□□□□□ -1.85
VPS13C-208ENST00000559119 ZNF148Q9UQR1 794 aa3.49□□□□□ -1.85
VPS13C-208ENST00000559119 CLSPNQ9HAW4 1339 aa3.48□□□□□ -1.85
VPS13C-208ENST00000559119 A0A087WUV0 522 aaPredicted RBP3.48□□□□□ -1.85
VPS13C-208ENST00000559119 GALR3O60755 368 aaPredicted RBP3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms