RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 HTR1EP28566 365 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 MMP12P39900 470 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 GBX1Q14549 363 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 DMC1Q14565 340 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ZIK1Q3SY52 487 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 FAM78AQ5JUQ0 283 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 TRAM1L1Q8N609 369 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CENPNQ96H22 339 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 C19orf43Q9BQ61 176 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 OR2AG1Q9H205 316 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CLMPQ9H6B4 373 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CNOT11Q9UKZ1 510 aaKnown RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 SNX6Q9UNH7 406 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 KCNE1BA0A087WTH5 132 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ARNTLO00327 626 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 GSTA4O15217 222 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ACOX3O15254 700 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 TNFAIP8O95379 198 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 GSTT1P30711 240 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CYP4F3Q08477 520 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 NADK2Q4G0N4 442 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 PLEKHS1Q5SXH7 462 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ZDHHC20Q5W0Z9 365 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 FRG2Q64ET8 278 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ANKRD34AQ69YU3 496 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 OR4F3Q6IEY1 312 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 KIAA0907Q7Z7F0 614 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 GALNT10Q86SR1 603 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 THOC6Q86W42 341 aaKnown RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 TRAPPC5Q8IUR0 188 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CELF5Q8N6W0 485 aaKnown RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 DDHD1Q8NEL9 900 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 OR7A2PQ8NGA2 310 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 FRG2BQ96QU4 278 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 OR4K3Q96R72 315 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ZSCAN5AQ9BUG6 496 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 OSBPL11Q9BXB4 747 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 LIMD1Q9UGP4 676 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 INVSQ9Y283 1065 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 WNT9AO14904 365 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 SPINT1O43278 529 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 RECQL5O94762 991 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 ETHE1O95571 254 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 SNAP29O95721 258 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 GBAP04062 536 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 GPIP06744 558 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 WASP42768 502 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 HSPA13P48723 471 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 MEF2AQ02078 507 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 SLC14A1Q13336 389 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 PLCL1Q15111 1095 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 NKG7Q16617 165 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 AASDHQ4L235 1098 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 RAET1GQ6H3X3 334 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ERAP2Q6P179 960 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 AGTRAPQ6RW13 159 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CRTC3Q6UUV7 619 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 LRRC70Q7Z2Q7 622 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CARM1Q86X55 608 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 MMAAQ8IVH4 418 aaKnown RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 HS3ST5Q8IZT8 346 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 CLEC4FQ8N1N0 589 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 GPR156Q8NFN8 814 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 PNPT1Q8TCS8 783 aaKnown RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 OSCP1Q8WVF1 389 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 NCLNQ969V3 563 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ARRDC3Q96B67 414 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 SAMD11Q96NU1 681 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 IGFLR1Q9H665 355 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 LTB4R2Q9NPC1 389 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 OLAHQ9NV23 265 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 ADGRE2Q9UHX3 823 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 PCDHB3Q9Y5E6 796 aa10.32□□□□□ -0.76
CUX1-217ENST00000558836 PCYT1BQ9Y5K3 369 aaPredicted RBP10.32□□□□□ -0.76
CUX1-217ENST00000558836 HEPACAM2A8MVW5 462 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 AXIN1O15169 862 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 SLCO2B1O94956 709 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 FGF19O95750 216 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 FTH1P02794 183 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 PIM1P11309 404 aaPredicted RBP10.31□□□□□ -0.76
CUX1-217ENST00000558836 NRIP1P48552 1158 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 HNMTP50135 292 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 MAD2L1Q13257 205 aaPredicted RBP10.31□□□□□ -0.76
CUX1-217ENST00000558836 DOC2AQ14183 400 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 RBM44Q6ZP01 1051 aaKnown RBP10.31□□□□□ -0.76
CUX1-217ENST00000558836 DPPA4Q7L190 304 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 GET4Q7L5D6 327 aaPredicted RBP10.31□□□□□ -0.76
CUX1-217ENST00000558836 TFAP2CQ92754 450 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 TMIGD2Q96BF3 282 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 PKP4Q99569 1192 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 MARK1Q9P0L2 795 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 STOX2Q9P2F5 926 aaPredicted RBP10.31□□□□□ -0.76
CUX1-217ENST00000558836 ERVK-11Q9UQG0 969 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 LRRK1Q38SD2 2015 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 SAP18O00422 153 aaKnown RBP10.31□□□□□ -0.76
CUX1-217ENST00000558836 AP1G1O43747 822 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 ATG13O75143 517 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 IL6P05231 212 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 TCF3P15923 654 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 S100A3P33764 101 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms