RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CAPRIN1Q14444 709 aaKnown RBP25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 C6orf10Q5SRN2 563 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 CRTC3Q6UUV7 619 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 ARPINQ7Z6K5 226 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 C11orf96Q7Z7L8 435 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 SPATA24Q86W54 205 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 FAM9CQ8IZT9 166 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 PQLC1Q8N2U9 271 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 LIX1Q8N485 282 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 DPY30Q9C005 99 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 PCDHAC1Q9H158 963 aa25.58■■□□□ 1.68
CCDC88C-205ENST00000553403 A0A1W2PP55 124 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 PRPS2P11908 318 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 ACADLP28330 430 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 HNF4AP41235 474 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 BNIP2Q12982 314 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 USP39Q53GS9 565 aaKnown RBP25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 SDE2Q6IQ49 451 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 UNC5DQ6UXZ4 953 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 TMEM125Q96AQ2 219 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 DUS3LQ96G46 650 aaKnown RBP25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 SERGEFQ9UGK8 458 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 TMEM98Q9Y2Y6 226 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 TMED5Q9Y3A6 229 aa25.57■■□□□ 1.68
CCDC88C-205ENST00000553403 EYSQ5T1H1 3165 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 MAPK1P28482 360 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 CSTF3Q12996 717 aaKnown RBP25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 XKR6Q5GH73 641 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 GRHL2Q6ISB3 625 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 TRMT11Q7Z4G4 463 aaKnown RBP25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 TMEM126BQ8IUX1 230 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 OR9A1PQ8NGU1 263 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 ZUFSPQ96AP4 578 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 FAM131CQ96AQ9 280 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 MED8Q96G25 268 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 ZNF184Q99676 751 aaPredicted RBP25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 TEX101Q9BY14 249 aa25.56■■□□□ 1.68
CCDC88C-205ENST00000553403 PRSS51A0A1B0GVH4 220 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 RPSAP08865 295 aaKnown RBP25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 CASP2P42575 452 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 STARD3Q14849 445 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 SLC44A4Q53GD3 710 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 LRRTM4Q86VH4 590 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 CACUL1Q86Y37 369 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 OR4K3Q96R72 315 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 MUC13Q9H3R2 512 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 ITM2CQ9NQX7 267 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 TICRRQ7Z2Z1 1910 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 TCRBV3S1A0A5B6 114 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 GPR89AB7ZAQ6 455 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 E7EQ34 232 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 RNASEH2AO75792 299 aaKnown RBP25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 GPR89BP0CG08 455 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 BCKDHAP12694 445 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 CTHP32929 405 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 NEK2P51955 445 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 EEFSECP57772 596 aaKnown RBP25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 RHDQ02161 417 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 DOC2AQ14183 400 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 E2F2Q14209 437 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 NFE2L1Q14494 772 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 CAPN13Q6MZZ7 669 aaPredicted RBP25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 SLC2A7Q6PXP3 512 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 AMZ2Q86W34 360 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 DHFR2Q86XF0 187 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 OXR1Q8N573 874 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 SMRP1Q8NCR6 262 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 ZNF480Q8WV37 535 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 TRIM15Q9C019 465 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 OR52A5Q9H2C5 316 aa25.55■■□□□ 1.68
CCDC88C-205ENST00000553403 KLHL33A6NCF5 533 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 H0YIV9 168 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 IL6P05231 212 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 CD22P20273 847 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 ATXN3P54252 364 aaPredicted RBP25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 PNLIPRP1P54315 467 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 COL19A1Q14993 1142 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 SKIV2LQ15477 1246 aaKnown RBP25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 TMEM196Q5HYL7 178 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 IRAK1BP1Q5VVH5 260 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 SUSD1Q6UWL2 747 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 HID1Q8IV36 788 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 KBTBD2Q8IY47 623 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 WDR20Q8TBZ3 569 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 FCRL1Q96LA6 429 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 ZDHHC5Q9C0B5 715 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 CLMPQ9H6B4 373 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 ZFR2Q9UPR6 939 aaKnown RBP25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 KCNE2Q9Y6J6 123 aa25.54■■□□□ 1.68
CCDC88C-205ENST00000553403 A0A0C4DFX4 3053 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 PEX1O43933 1283 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 HSD3B1P14060 373 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 HSD3B2P26439 372 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 CLDN8P56748 225 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 RPS21P63220 83 aaKnown RBP25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 PWP1Q13610 501 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 PTGR1Q14914 329 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 AAK1Q2M2I8 961 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 PLA2G4EQ3MJ16 856 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 KIAA1161Q6NSJ0 714 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms