RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MSRB3Q8IXL7 192 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 GOLM1Q8NBJ4 401 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 GLB1L3Q8NCI6 653 aaPredicted RBP15.87■□□□□ 0.13
COL4A1-204ENST00000543140 FBXL8Q96CD0 374 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 AURKBQ96GD4 344 aaPredicted RBP15.87■□□□□ 0.13
COL4A1-204ENST00000543140 CENPNQ96H22 339 aaPredicted RBP15.87■□□□□ 0.13
COL4A1-204ENST00000543140 MTERF1Q99551 399 aaKnown RBP15.87■□□□□ 0.13
COL4A1-204ENST00000543140 OSBPL11Q9BXB4 747 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 EBPLQ9BY08 206 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PRM3Q9NNZ6 103 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 RNF103-CHMP3A0A140T963 221 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 A0A1B0GTW7 788 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 HEPACAM2A8MVW5 462 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 E7EQ34 232 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 H0YJX3 145 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PLOD2O00469 737 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 SH3BGRLO75368 114 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PSIP1O75475 530 aaKnown RBP15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PRNPP04156 253 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 NRIP1P48552 1158 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PRLHRP49683 370 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 CCT8P50990 548 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 CYP4F3Q08477 520 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 LIN52Q52LA3 116 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 AGTRAPQ6RW13 159 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PROSER1Q86XN7 944 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PHACTR4Q8IZ21 702 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 FIG4Q92562 907 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 FGF13Q92913 245 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 VPS35Q96QK1 796 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 HPS4Q9NQG7 708 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 ASIC5Q9NY37 505 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 NFKBIL1Q9UBC1 381 aaPredicted RBP15.87■□□□□ 0.13
COL4A1-204ENST00000543140 DPP7Q9UHL4 492 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 MMP20O60882 483 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 RECQL5O94762 991 aaPredicted RBP15.86■□□□□ 0.13
COL4A1-204ENST00000543140 SLC16A8O95907 504 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 RB1P06400 928 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 SDC1P18827 310 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 SF1Q15637 639 aaKnown RBP15.86■□□□□ 0.13
COL4A1-204ENST00000543140 GAB4Q2WGN9 574 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 PYCR3Q53H96 274 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 PRR23BQ6ZRT6 265 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 SATL1Q86VE3 508 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 LMNTD1Q8N9Z9 388 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 OR2T12Q8NG77 320 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 OR8J3Q8NGG0 315 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 DTD2Q96FN9 168 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 COQ10AQ96MF6 247 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 ASB16Q96NS5 453 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 OR2AG1Q9H205 316 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 STOX2Q9P2F5 926 aaPredicted RBP15.86■□□□□ 0.13
COL4A1-204ENST00000543140 CEP290O15078 2479 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 TNFAIP8O95379 198 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 SOD1P00441 154 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 S100A3P33764 101 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 CLDN8P56748 225 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 FXNQ16595 210 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 HNRNPA1L2Q32P51 320 aaKnown RBP15.86■□□□□ 0.13
COL4A1-204ENST00000543140 GCNT7Q6ZNI0 430 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 CFAP206Q8IYR0 622 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 HCAR2Q8TDS4 363 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 INPP5KQ9BT40 448 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 CHID1Q9BWS9 393 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 GULP1Q9UBP9 304 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 MAGEL2Q9UJ55 1249 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 PPT2Q9UMR5 302 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 PCDHB14Q9Y5E9 798 aa15.86■□□□□ 0.13
COL4A1-204ENST00000543140 SLC5A10A0PJK1 596 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 GSTA4O15217 222 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 KIF1CO43896 1103 aaKnown RBP15.85■□□□□ 0.13
COL4A1-204ENST00000543140 PCNAP12004 261 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 JUPP14923 745 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 TSTA3Q13630 321 aaPredicted RBP15.85■□□□□ 0.13
COL4A1-204ENST00000543140 DOC2AQ14183 400 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 ZNF234Q14588 700 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 NHSL2Q5HYW2 709 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 RAET1GQ6H3X3 334 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 ADNP2Q6IQ32 1131 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 GET4Q7L5D6 327 aaPredicted RBP15.85■□□□□ 0.13
COL4A1-204ENST00000543140 TRAPPC5Q8IUR0 188 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 RASGRP3Q8IV61 690 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 OR8D1Q8WZ84 308 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 SMARCD2Q92925 531 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 CMTM7Q96FZ5 175 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 VPS50Q96JG6 964 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 OR4K3Q96R72 315 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 PKP4Q99569 1192 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 FAM192AQ9GZU8 254 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 QSOX1O00391 747 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 NFATC1O95644 943 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 CATP04040 527 aaKnown RBP15.85■□□□□ 0.13
COL4A1-204ENST00000543140 UMPSP11172 480 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 GGT1P19440 569 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 C9orf50Q5SZB4 431 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 CACUL1Q86Y37 369 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 MMAAQ8IVH4 418 aaKnown RBP15.85■□□□□ 0.13
COL4A1-204ENST00000543140 TBC1D21Q8IYX1 336 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 NRSN1Q8IZ57 195 aa15.85■□□□□ 0.13
COL4A1-204ENST00000543140 GLMNQ92990 594 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms