RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ATP13A5Q4VNC0 1218 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 LDLRAP1Q5SW96 308 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 CEP85LQ5SZL2 805 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 FAM199XQ6PEV8 388 aaPredicted RBP12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 DOK6Q6PKX4 331 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 KIAA0408Q6ZU52 694 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 SYVN1Q86TM6 617 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 LDB1Q86U70 411 aaPredicted RBP12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 NLRP8Q86W28 1048 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 SERPINA9Q86WD7 417 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 CILP2Q8IUL8 1156 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 RASGRP3Q8IV61 690 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 DENND6AQ8IWF6 608 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 CISD2Q8N5K1 135 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 GPR150Q8NGU9 434 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 OR2W6PQ8NHA6 318 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 DTX3LQ8TDB6 740 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 SH3KBP1Q96B97 665 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 SGSM3Q96HU1 749 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 ZIM3Q96PE6 472 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 TCF12Q99081 682 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 COPS8Q99627 209 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 FUT8Q9BYC5 575 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 ZCCHC2Q9C0B9 1178 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 EPB41L4BQ9H329 900 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 CENPHQ9H3R5 247 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 EPB41L1Q9H4G0 881 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 PLAC1Q9HBJ0 212 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 FBXO6Q9NRD1 293 aaPredicted RBP12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 INTS10Q9NVR2 710 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 VPS18Q9P253 973 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 SLC17A6Q9P2U8 582 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 LNPEPQ9UIQ6 1025 aa12.13□□□□□ -0.47
CLSTN3-208ENST00000538933 ABCA2Q9BZC7 2435 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 FER1L5A0AVI2 2057 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 FADS2P1A8MWK0 482 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 CXorf49A8MYA2 514 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 GAPDHSO14556 408 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 GPR39O43194 453 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 MT-ND3P03897 115 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SHBGP04278 402 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 PRSS56P0CW18 603 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SPTBP11277 2137 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 ACRV1P26436 265 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SPRP35270 261 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 MAPK9P45984 424 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SLCO1A2P46721 670 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 CD151P48509 253 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SEPHS1P49903 392 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 CDKN1CP49918 316 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SERPINB9P50453 376 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SLC12A2P55011 1212 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 CSE1LP55060 971 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 ILF2Q12905 390 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 ITIH4Q14624 930 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 TMED2Q15363 201 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 GPRC6AQ5T6X5 926 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 GRTP1Q5TC63 336 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 LRIG3Q6UXM1 1119 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 ADAMTSL4Q6UY14 1074 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 PACS1Q6VY07 963 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 TRIM74Q86UV6 250 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 CNTN4Q8IWV2 1026 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 NXPE1Q8N323 547 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 C2CD4AQ8NCU7 369 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 HEXDCQ8WVB3 486 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 KLHL6Q8WZ60 621 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 GLYATL1Q969I3 302 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 COX14Q96I36 57 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 LURAP1Q96LR2 239 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 VPS35Q96QK1 796 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SMAD5Q99717 465 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 ROPN1BQ9BZX4 212 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 ROPN1Q9HAT0 212 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SMYD2Q9NRG4 433 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SMOXQ9NWM0 555 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 ZDHHC3Q9NYG2 299 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 MARCH4Q9P2E8 410 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 PSMC3IPQ9P2W1 217 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SLC24A2Q9UI40 661 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 NTNG1Q9Y2I2 539 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 CRYL1Q9Y2S2 319 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 SEC16AO15027 2179 aa12.12□□□□□ -0.47
CLSTN3-208ENST00000538933 MYO7BQ6PIF6 2116 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 IQANK1A0A1B0GTG1 560 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 LILRA5A6NI73 299 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 KIF1CO43896 1103 aaKnown RBP12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 DNAJC6O75061 913 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 CDH16O75309 829 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 MYZAPP0CAP1 466 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 UBE2IP63279 158 aaKnown RBP12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 SEMA3AQ14563 771 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 DBN1Q16643 649 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 TYSND1Q2T9J0 566 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 PTRHD1Q6GMV3 140 aaKnown RBP12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 PWWP2BQ6NUJ5 590 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 ZNF517Q6ZMY9 492 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 MICALCLQ6ZW33 695 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 PIANPQ8IYJ0 282 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 IQCKQ8N0W5 287 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms