RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TMPRSS7Q7RTY8 843 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 TECPR1Q7Z6L1 1165 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 HEATR4Q86WZ0 1026 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 SFTPA2Q8IWL1 248 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 SCUBE1Q8IWY4 988 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 ULK2Q8IYT8 1036 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 CLDN19Q8N6F1 224 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 ACTRT2Q8TDY3 377 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 MARK4Q96L34 752 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 NSUN5Q96P11 429 aaKnown RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 THTPAQ9BU02 230 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 MID1IP1Q9NPA3 183 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 SPASTQ9UBP0 616 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 KLQ9UEF7 1012 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 L3MBTL1Q9Y468 752 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 ZFC3H1O60293 1989 aaKnown RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 FAM221BA6H8Z2 402 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 NCF1BA6NI72 391 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 NCF1CA8MVU1 366 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 STX16-NPEPL1H3BU86 382 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 CACNB4O00305 520 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 PPP6CO00743 305 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 STX16O14662 325 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 SOD1P00441 154 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 NCF1P14598 390 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 EZRP15311 586 aaKnown RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 ADSLP30566 484 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 INHBCP55103 352 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 CUL3Q13618 768 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 KPNB1Q14974 876 aaKnown RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 UGT3A2Q3SY77 523 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 FAM219BQ5XKK7 198 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 RAET1GQ6H3X3 334 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 TRIM74Q86UV6 250 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 GPSM1Q86YR5 675 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 OR56A4Q8NGH8 313 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 CCL4L1Q8NHW4 92 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 PDLIM5Q96HC4 596 aaKnown RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 CLPTM1LQ96KA5 538 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 WDR92Q96MX6 357 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 MOSPD1Q9UJG1 213 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 COPG1Q9Y678 874 aaKnown RBP11.64□□□□□ -0.55
CLIP1-208ENST00000537004 PRSS21Q9Y6M0 314 aa11.64□□□□□ -0.55
CLIP1-208ENST00000537004 CHD6Q8TD26 2715 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ITPR1Q14643 2758 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 RGSL1A5PLK6 1076 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 AGAP14A8MT82 685 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 LMO7DNF2Z398 122 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 TOR1BO14657 336 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 RPS17P08708 135 aaKnown RBP11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ALPPL2P10696 532 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 THRAP10827 490 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 CKMT1AP12532 417 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 CD1EP15812 388 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ITGB6P18564 788 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ACP1P24666 158 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 CLCQ05315 142 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 LCP2Q13094 533 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ST3GAL2Q16842 350 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 FBXO48Q5FWF7 155 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 HES3Q5TGS1 186 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ANKS6Q68DC2 871 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 GUSBP11Q6P575 273 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 CYHR1Q6ZMK1 362 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 SNX32Q86XE0 403 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 SLC35F3Q8IY50 421 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 CLYBLQ8N0X4 340 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 LKAAEAR1Q8TD35 194 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 TRPC4APQ8TEL6 797 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 WDR60Q8WVS4 1066 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 BTN2A2Q8WVV5 523 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 PLEKHG4BQ96PX9 1271 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 C1QTNF3Q9BXJ4 246 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 TMEM168Q9H0V1 697 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ABCG8Q9H221 673 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 RNPEPL1Q9HAU8 725 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ZBTB26Q9HCK0 441 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 CD274Q9NZQ7 290 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 NKX1-2Q9UD57 310 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-208ENST00000537004 TMCO1Q9UM00 188 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 PCDHGA1Q9Y5H4 931 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 CSNK1G3Q9Y6M4 447 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 ACACAQ13085 2346 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 PKD1L2Q7Z442 2459 aa11.63□□□□□ -0.55
CLIP1-208ENST00000537004 A0A088AWK7 358 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 CPED1A4D0V7 1026 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 PSMD11O00231 422 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 AZIN1O14977 448 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 SNX2O60749 519 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 SLC25A14O95258 325 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 RASGRP1O95267 797 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 FGF4P08620 206 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 CTSEP14091 401 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ITGAXP20702 1163 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 NFKBIAP25963 317 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 AGTR2P50052 363 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 NAA20P61599 178 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 CDK3Q00526 305 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 TGFBIQ15582 683 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ATP13A5Q4VNC0 1218 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms