RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 THUMPD1Q9NXG2 353 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PRKAG2Q9UGJ0 569 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 Q9Y3F1 56 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 FUOMA2VDF0 154 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 AREL1O15033 823 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 DNAJB5O75953 348 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CCNB2O95067 398 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CHRNA1P02708 482 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TNNI3P19429 210 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PRDX3P30048 256 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ERVPABLB-1P60509 514 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 COX10Q12887 443 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 DUOXA1Q1HG43 343 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TPRG1LQ5T0D9 272 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ATAD3BQ5T9A4 648 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 KIAA1614Q5VZ46 1190 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 C1GALT1C1Q96EU7 318 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PAWRQ96IZ0 340 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 C11orf84Q9BUA3 381 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ACAT2Q9BWD1 397 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 FZD4Q9ULV1 537 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC45A1Q9Y2W3 748 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PRR23AA6NEV1 266 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 SERPINB7O75635 380 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 CLDN7O95471 211 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 SPATA31D3P0C874 917 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 GABRR2P28476 465 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 ADRA1AP35348 466 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 HNF4AP41235 474 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 RFX3P48380 749 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 BMXP51813 675 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 MANFP55145 182 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 ZNF404Q494X3 552 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 ATG9BQ674R7 924 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 ALKAL1Q6UXT8 129 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 TMPRSS11AQ6ZMR5 421 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 SPATA31D4Q6ZUB0 917 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 BEND5Q7L4P6 421 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 SCD5Q86SK9 330 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 FBXO22Q8NEZ5 403 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 NCSTNQ92542 709 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 MAELQ96JY0 434 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 YME1L1Q96TA2 773 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 FAM83DQ9H4H8 585 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 RMI1Q9H9A7 625 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 CAPN10Q9HC96 672 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 RPRD1BQ9NQG5 326 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 VPS29Q9UBQ0 182 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC22A14Q9Y267 594 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 GPR45Q9Y5Y3 372 aa8.21□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC1A7O00341 560 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 AP2A2O94973 939 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 C9P02748 559 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 OPN1SWP03999 348 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 TUBA1BP68363 451 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 RCAN2Q14206 197 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 DSC3Q14574 896 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 RAB41Q5JT25 222 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 PLEKHM3Q6ZWE6 761 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 TUBA1AQ71U36 451 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 SCML4Q8N228 414 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ABHD11Q8NFV4 315 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 AP3S1Q92572 193 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 TIFAQ96CG3 184 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF607Q96SK3 696 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC9A8Q9Y2E8 581 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MYH9P35579 1960 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MBLAC1A4D2B0 266 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 LDB2O43679 373 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC28A2O43868 658 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MPZL2O60487 215 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 PTX3P26022 381 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 TIE1P35590 1138 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 PLA2G16P53816 162 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MCCD1P59942 119 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 CD47Q08722 323 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MADCAM1Q13477 382 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MPPE1Q53F39 396 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MED27Q6P2C8 311 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MZT2AQ6P582 158 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 LRRC70Q7Z2Q7 622 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 LGI4Q8N135 537 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ARL14EPQ8N8R7 260 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 DIRAS2Q96HU8 199 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 UBXN10Q96LJ8 280 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 KCNH6Q9H252 994 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ARNT2Q9HBZ2 717 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MOV10Q9HCE1 1003 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 KLHL1Q9NR64 748 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 PCDHGA11Q9Y5H2 935 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 GADD45GO95257 159 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MT-ND2P03891 347 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 INHBEP58166 350 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 GABARAPL2P60520 117 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 RELAQ04206 551 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 MXD1Q05195 221 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 APOFQ13790 326 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 PON2Q15165 354 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 C18orf21Q32NC0 220 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms