RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, human

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-208	ENST00000507247	ARFGAP2	Q8N6H7	521 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	HMGCLL1	Q8TB92	370 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	CCDC74A	Q96AQ1	378 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	SH3KBP1	Q96B97	665 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	CCDC126	Q96EE4	140 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	L3HYPDH	Q96EM0	354 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	MED8	Q96G25	268 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	NSUN5	Q96P11	429 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	SLC38A3	Q99624	504 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	GATA5	Q9BWX5	397 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	SGPP1	Q9BX95	441 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	ERVK-6	Q9BXR3	956 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	PITPNM3	Q9BZ71	974 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	CD244	Q9BZW8	370 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	TWSG1	Q9GZX9	223 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	SRMS	Q9H3Y6	488 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	INTS9	Q9NV88	658 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	INTS7	Q9NVH2	962 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	SPHK1	Q9NYA1	384 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	OGFR	Q9NZT2	677 aa		13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	RIF1	Q5UIP0	2472 aa	Known RBP	13.73	□□□□□ -0.21
RNF4-208	ENST00000507247	PTPRZ1	P23471	2315 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	EME2	A4GXA9	379 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	OR6C74	A6NCV1	312 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	E2F3	O00716	465 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	CASC3	O15234	703 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	PRICKLE3	O43900	615 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	SH3BP5	O60239	455 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	KDM1A	O60341	852 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	CCNT2	O60583	730 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	STK16	O75716	305 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	WDR47	O94967	919 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	CHRM5	P08912	532 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	IMPDH1	P20839	514 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	BGN	P21810	368 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	PSMB5	P28074	263 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	HSD17B2	P37059	387 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	CCR10	P46092	362 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	TSTA3	Q13630	321 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	CHI3L2	Q15782	390 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	INAVA	Q3KP66	663 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	RAB44	Q7Z6P3	723 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	THOC6	Q86W42	341 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	NAXD	Q8IW45	347 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	KIAA2013	Q8IYS2	634 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	RAB42	Q8N4Z0	105 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	OR6Y1	Q8NGX8	325 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	RHBDD1	Q8TEB9	315 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	SETD7	Q8WTS6	366 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	SMPDL3A	Q92484	453 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	RSC1A1	Q92681	617 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	CNDP2	Q96KP4	475 aa	Known RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	OR4K3	Q96R72	315 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	C1QTNF3	Q9BXJ4	246 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	GSTO2	Q9H4Y5	243 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	CCDC177	Q9NQR7	707 aa	Predicted RBP	13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	ABCF3	Q9NUQ8	709 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	PCTP	Q9UKL6	214 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	SH2B3	Q9UQQ2	575 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	SLC22A14	Q9Y267	594 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	DNAH14	Q0VDD8	3507 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	ASXL3	Q9C0F0	2248 aa		13.72	□□□□□ -0.21
RNF4-208	ENST00000507247	DCHS1	Q96JQ0	3298 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	CPED1	A4D0V7	1026 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	FAM221B	A6H8Z2	402 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	ZNF839	A8K0R7	811 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247		K7EPI3	171 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	B4GAT1	O43505	415 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	FOXD2	O60548	495 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	LDOC1	O95751	146 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	CKMT1A	P12532	417 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	TYRP1	P17643	537 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	EPOR	P19235	508 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	POLR2C	P19387	275 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	ALDH4A1	P30038	563 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	EPHA4	P54764	986 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	NAGLU	P54802	743 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	GYS2	P54840	703 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	OR1D5	P58170	312 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	DAB2	P98082	770 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	STPG1	Q5TH74	334 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	CAPN13	Q6MZZ7	669 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	ATG14	Q6ZNE5	492 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	LRRC70	Q7Z2Q7	622 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	EFL1	Q7Z2Z2	1120 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	GOLGA7	Q7Z5G4	137 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	CCNYL1	Q8N7R7	359 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	OR6C4	Q8NGE1	309 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	OR10G6	Q8NH81	332 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	FLVCR1-AS1	Q8TAF5	88 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	BAHD1	Q8TBE0	780 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	ZNF483	Q8TF39	744 aa	Predicted RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	SLC32A1	Q9H598	525 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	ZBTB26	Q9HCK0	441 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	KCNK4	Q9NYG8	393 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	OR6C2	Q9NZP2	312 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	OPTC	Q9UBM4	332 aa		13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	TNPO3	Q9Y5L0	923 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-208	ENST00000507247	HEATR5B	Q9P2D3	2071 aa		13.7	□□□□□ -0.22

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