RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ADGRG2Q8IZP9 1017 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SDCCAG3Q96C92 435 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RBM4BQ9BQ04 359 aaKnown RBP15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RBM4Q9BWF3 364 aaKnown RBP15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ACPTQ9BZG2 426 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GPN2Q9H9Y4 310 aaPredicted RBP15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DLGAP4Q9Y2H0 992 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GLYATL1P3A0A0U1RQE8 302 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FAM220BPB1ANY3 271 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TLL1O43897 1013 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 EPB42P16452 691 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AGXTP21549 392 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PRKACGP22612 351 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MAP4P27816 1152 aaKnown RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PLA2G16P53816 162 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SMAD3P84022 425 aaKnown RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PIGFQ07326 219 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 EPS8Q12929 822 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DPY19L1Q2PZI1 675 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 LRIF1Q5T3J3 769 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GRAMD4Q6IC98 578 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 METTL2BQ6P1Q9 378 aaKnown RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TMEM53Q6P2H8 277 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TMEM150AQ86TG1 271 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZSWIM9Q86XI8 627 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DCAF4L2Q8NA75 395 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 OR5K1Q8NHB7 308 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FRS2Q8WU20 508 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AUTS2Q8WXX7 1259 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FKBP10Q96AY3 582 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 C19orf43Q9BQ61 176 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 LATS2Q9NRM7 1088 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PDE10AQ9Y233 779 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NOL3O60936 208 aaKnown RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 B3GALT4O96024 378 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PTPN6P29350 595 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BMXP51813 675 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ISL1P61371 349 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZXDCQ2QGD7 858 aaPredicted RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PSRC1Q6PGN9 363 aaPredicted RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CHRDL2Q6WN34 429 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HJURPQ8NCD3 748 aaPredicted RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZNF555Q8NEP9 628 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PLEKHA8Q96JA3 519 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 INPP5KQ9BT40 448 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MRPL9Q9BYD2 267 aaKnown RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SLC29A3Q9BZD2 475 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KCNH6Q9H252 994 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MAGIXQ9H6Y5 334 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HECAQ9UBI9 543 aaPredicted RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TMEFF2Q9UIK5 374 aaPredicted RBP15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CRLS1Q9UJA2 301 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PSME2Q9UL46 239 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MAN2B2Q9Y2E5 1009 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AP3M1Q9Y2T2 418 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 YIPF1Q9Y548 306 aa15.68■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 A8MX80 341 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GNGT2O14610 69 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 STK16O75716 305 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ABLIM3O94929 683 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SERPINA1P01009 418 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PDYNP01213 254 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PFKLP17858 780 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MLLT10P55197 1068 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GABARAPL2P60520 117 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BCL2L1Q07817 233 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 LYPLAL1Q5VWZ2 237 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 THOC7Q6I9Y2 204 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NXPE1Q8N323 547 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZCCHC7Q8N3Z6 543 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GIPC3Q8TF64 312 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RAB2BQ8WUD1 216 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SNRNP27Q8WVK2 155 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BHMTQ93088 406 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 VOPP1Q96AW1 172 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ULK4Q96C45 1275 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZNF689Q96CS4 500 aaPredicted RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TRMT2BQ96GJ1 504 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RC3H2Q9HBD1 1191 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TBC1D23Q9NUY8 699 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TDRKHQ9Y2W6 561 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 A0A096LPI6 279 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 LOC100130705A0A1B0GUX0 176 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 C16orf96A6NNT2 1141 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AGAP14A8MT82 685 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ERN1O75460 977 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZNF821O75541 412 aaPredicted RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CLDN9O95484 217 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 LATS1O95835 1130 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 IL1RNP18510 177 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CLDN8P56748 225 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 C21orf59P57076 290 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RPS14P62263 151 aaKnown RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ARHGEF7Q14155 803 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CPSF6Q16630 551 aaKnown RBP eCLIP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZNF691Q5VV52 312 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZNF551Q7Z340 670 aaPredicted RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TSPAN33Q86UF1 283 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZBTB46Q86UZ6 589 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DCP2Q8IU60 420 aaKnown RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms