RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 MSL3P1P0C860 447 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 TPBGLP0DKB5 382 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 PVRP15151 417 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 ITGA1P56199 1179 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 IL2P60568 153 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 RHDQ02161 417 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 TSTA3Q13630 321 aaPredicted RBP15.8■□□□□ 0.12
SF3A1-209ENST00000496189 ARHGAP19Q14CB8 494 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 INO80CQ6PI98 192 aaPredicted RBP15.8■□□□□ 0.12
SF3A1-209ENST00000496189 UBE2R2Q712K3 238 aaPredicted RBP15.8■□□□□ 0.12
SF3A1-209ENST00000496189 TRIM73Q86UV7 250 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 C2orf73Q8N5S3 287 aaPredicted RBP15.8■□□□□ 0.12
SF3A1-209ENST00000496189 GALNT6Q8NCL4 622 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 MCOLN3Q8TDD5 553 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 ZNF501Q96CX3 271 aaPredicted RBP15.8■□□□□ 0.12
SF3A1-209ENST00000496189 CLIP3Q96DZ5 547 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 IL17FQ96PD4 163 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 CYTH2Q99418 400 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 NRTNQ99748 197 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 CDC42EP4Q9H3Q1 356 aaKnown RBP15.8■□□□□ 0.12
SF3A1-209ENST00000496189 RHOJQ9H4E5 214 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 NINJ2Q9NZG7 142 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 SLC17A6Q9P2U8 582 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 PADI1Q9ULC6 663 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 SSUH2Q9Y2M2 353 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 VWA7Q9Y334 891 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 ZZEF1O43149 2961 aa15.8■□□□□ 0.12
SF3A1-209ENST00000496189 ARHGEF33A8MVX0 844 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 E7EQ34 232 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 CCNDBP1O95273 360 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 C8GP07360 202 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 HIST1H2AGP0C0S8 130 aaPredicted RBP15.79■□□□□ 0.12
SF3A1-209ENST00000496189 HIST1H2ADP20671 130 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 CMPK1P30085 196 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 RPA3P35244 121 aaPredicted RBP15.79■□□□□ 0.12
SF3A1-209ENST00000496189 GP5P40197 560 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 MC1RQ01726 317 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 SP140Q13342 867 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 GRB7Q14451 532 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 KBTBD12Q3ZCT8 623 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 ZC3H12BQ5HYM0 836 aaKnown RBP15.79■□□□□ 0.12
SF3A1-209ENST00000496189 GRTP1Q5TC63 336 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 HECTD2Q5U5R9 776 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 PWWP2BQ6NUJ5 590 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 TRMT10CQ7L0Y3 403 aaKnown RBP15.79■□□□□ 0.12
SF3A1-209ENST00000496189 ZC3HC1Q86WB0 502 aaKnown RBP15.79■□□□□ 0.12
SF3A1-209ENST00000496189 SYTL1Q8IYJ3 562 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 PPM1NQ8N819 430 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 LINC01555Q8NAE3 123 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 FBXO15Q8NCQ5 510 aaPredicted RBP15.79■□□□□ 0.12
SF3A1-209ENST00000496189 GIMAP7Q8NHV1 300 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 HMGCLL1Q8TB92 370 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 ASB11Q8WXH4 323 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 SMPDL3AQ92484 453 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 HIST1H2AHQ96KK5 128 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 SLC30A3Q99726 388 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 HIST1H2AJQ99878 128 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 H2AFJQ9BTM1 129 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 TRIM54Q9BYV2 358 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 CHRNA10Q9GZZ6 450 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 UTP6Q9NYH9 597 aaKnown RBP15.79■□□□□ 0.12
SF3A1-209ENST00000496189 KCND3Q9UK17 655 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 PCDHB3Q9Y5E6 796 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 PSAT1Q9Y617 370 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 SDK2Q58EX2 2172 aa15.79■□□□□ 0.12
SF3A1-209ENST00000496189 DSPP15924 2871 aaKnown RBP15.78■□□□□ 0.12
SF3A1-209ENST00000496189 EIF4E1BA6NMX2 242 aaKnown RBP15.78■□□□□ 0.12
SF3A1-209ENST00000496189 ZNF891A8MT65 544 aaPredicted RBP15.78■□□□□ 0.12
SF3A1-209ENST00000496189 MYO1CO00159 1063 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 EFSO43281 561 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 ACSL3O95573 720 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 MAGP20916 626 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 SAT1P21673 171 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 TNFRSF8P28908 595 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 SPRP35270 261 aaPredicted RBP15.78■□□□□ 0.12
SF3A1-209ENST00000496189 STAT5AP42229 794 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 RBM20Q5T481 1227 aaKnown RBP15.78■□□□□ 0.12
SF3A1-209ENST00000496189 THEMIS2Q5TEJ8 643 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 CDHR3Q6ZTQ4 885 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 EEF1AKMT1Q8WVE0 214 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 ZUFSPQ96AP4 578 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 LINGO1Q96FE5 620 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 TSPAN17Q96FV3 270 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 CRELD1Q96HD1 420 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 UBL7Q96S82 380 aaPredicted RBP15.78■□□□□ 0.12
SF3A1-209ENST00000496189 SPRY4Q9C004 299 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 ACTR5Q9H9F9 607 aaPredicted RBP15.78■□□□□ 0.12
SF3A1-209ENST00000496189 SMYD2Q9NRG4 433 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 PLCL2Q9UPR0 1127 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 MED16Q9Y2X0 877 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 IKBKGQ9Y6K9 419 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 AP1M2Q9Y6Q5 423 aa15.78■□□□□ 0.12
SF3A1-209ENST00000496189 LAMA5O15230 3695 aa15.77■□□□□ 0.12
SF3A1-209ENST00000496189 A0A087WUV0 522 aaPredicted RBP15.77■□□□□ 0.12
SF3A1-209ENST00000496189 FAM95CA0A1B0GW59 222 aa15.77■□□□□ 0.12
SF3A1-209ENST00000496189 CXorf49A8MYA2 514 aaPredicted RBP15.77■□□□□ 0.12
SF3A1-209ENST00000496189 SLC16A5O15375 505 aa15.77■□□□□ 0.12
SF3A1-209ENST00000496189 OR2B3O76000 313 aa15.77■□□□□ 0.12
SF3A1-209ENST00000496189 NTRK1P04629 796 aa15.77■□□□□ 0.12
SF3A1-209ENST00000496189 LIFP15018 202 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms