RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 TAZQ16635 292 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 LONRF1Q17RB8 773 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 FAAH2Q6GMR7 532 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 PRMT9Q6P2P2 845 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 CNSTQ6PJW8 725 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 SUN3Q8TAQ9 357 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 SLC22A18Q96BI1 424 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 MIEF2Q96C03 454 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 MAGED4Q96JG8 741 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 GBA3Q9H227 469 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 FAM96AQ9H5X1 160 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 INTS7Q9NVH2 962 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 DDX56Q9NY93 547 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 SAE1Q9UBE0 346 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 ZNF282Q9UDV7 671 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 RSPH14Q9UHP6 348 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 TINAGQ9UJW2 476 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 C3orf18Q9UK00 162 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 TDRKHQ9Y2W6 561 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 MEMO1Q9Y316 297 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 PCDHGB6Q9Y5F9 930 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 FBN3Q75N90 2809 aa13.6□□□□□ -0.23
PRPF40A-211ENST00000493468 FAM221AA4D161 298 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 OR5H15A6NDH6 313 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 H7C0S8 307 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 ZRANB2O95218 330 aaKnown RBP eCLIP13.59□□□□□ -0.236e-7■□□□□ 8.7
PRPF40A-211ENST00000493468 FKBP9O95302 570 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 WDPCPO95876 746 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 S1PR4O95977 384 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 PECAM1P16284 738 aaPredicted RBP13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 MCM3P25205 808 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 ARHGAP25P42331 645 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 ZBED6P86452 979 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 MESDQ14696 234 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 ODF2Q5BJF6 829 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 HIBCHQ6NVY1 386 aaPredicted RBP13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 SERPINA9Q86WD7 417 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 CLDN19Q8N6F1 224 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 SIRT6Q8N6T7 355 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 PHF10Q8WUB8 498 aaKnown RBP13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 RNF25Q96BH1 459 aaPredicted RBP13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 C8orf44Q96CB5 159 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 NAP1L5Q96NT1 182 aaPredicted RBP13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 QKIQ96PU8 341 aaKnown RBP eCLIP13.59□□□□□ -0.232e-31■■■■■ 60
PRPF40A-211ENST00000493468 SELENOSQ9BQE4 189 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 BPIFA3Q9BQP9 254 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 GORASP1Q9BQQ3 440 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 TMUB1Q9BVT8 246 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 NAT10Q9H0A0 1025 aaKnown RBP13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 ZNF304Q9HCX3 659 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 LMBRD1Q9NUN5 540 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 RIC8BQ9NVN3 520 aa13.59□□□□□ -0.23
PRPF40A-211ENST00000493468 SCN2AQ99250 2005 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 IGHV1-45A0A0A0MS14 117 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 SLC5A10A0PJK1 596 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 HACD1B0YJ81 288 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 SRPX2O60687 465 aaPredicted RBP13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 WFS1O76024 890 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 MLYCDO95822 493 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 FTH1P02794 183 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 MC4RP32245 332 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 CDKN2BP42772 138 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 CSNK1G2P78368 415 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 NR1I3Q14994 352 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 KRTCAP3Q53RY4 240 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 MFSD7Q6UXD7 560 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 TMTC1Q8IUR5 882 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 METTL27Q8N6F8 245 aaPredicted RBP13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 LINC01555Q8NAE3 123 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 IQCDQ96DY2 449 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 GPR137Q96N19 417 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 MENTQ9BUN1 341 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 PACSIN1Q9BY11 444 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 PLAGL1Q9UM63 463 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 KLHL20Q9Y2M5 609 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 NEU2Q9Y3R4 380 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 MAU2Q9Y6X3 613 aa13.58□□□□□ -0.24
PRPF40A-211ENST00000493468 TARM1B6A8C7 271 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 BHMG1C9JSJ3 638 aaPredicted RBP13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 CST8O60676 142 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 FAM155BO75949 473 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 F10P00742 488 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 UQCRHP07919 91 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 TMEM253P0C7T8 217 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 CXCR2P25025 360 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 CDKN1CP49918 316 aaPredicted RBP13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 ART1P52961 327 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 DNAJC21Q5F1R6 531 aaKnown RBP13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 ITPRIPL1Q6GPH6 555 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 FIGLAQ6QHK4 219 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 PACS1Q6VY07 963 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 MEX3BQ6ZN04 569 aaKnown RBP13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 SPPL2CQ8IUH8 684 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 ELMO1Q92556 727 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 P3H4Q92791 437 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 ZUFSPQ96AP4 578 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 C14orf105Q9NVL8 296 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 FEZ2Q9UHY8 353 aaPredicted RBP13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 CAPN11Q9UMQ6 739 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 AAR2Q9Y312 384 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms